1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtcattttcatagtactgatctgatgtttgctggtaacttgtgaaatttttgcatttttataattttctttattgtgtgttacttgttccatactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAA
species | Zea mays |
transcript | GRMZM2G124365_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|32842515|gb|CD982196.1|CD982196
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|149077331|gb|EE166010.2|EE166010
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|32842440|gb|CD982121.1|CD982121
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|149071764|gb|EE160157.2|EE160157
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|71302286|gb|DR787262.1|DR787262
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|211304786|gb|FL143335.1|FL143335
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|211089061|gb|FL455585.1|FL455585
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|32842791|gb|CD982472.1|CD982472
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: CCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|71302288|gb|DR787263.1|DR787263
genomic: CCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|32851768|gb|CD991449.1|CD991449
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|211304784|gb|FL143333.1|FL143333
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|32842684|gb|CD982365.1|CD982365
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|32851767|gb|CD991448.1|CD991448
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|67010340|gb|CO439089.1|CO439089
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTEST: gi|32842553|gb|CD982234.1|CD982234
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
EST: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAG GCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
genomic: GTGATGGTAATGCTGGATCCAGTGCTCTTTGTGACACAACCTGCTTGCAGgtacagctga ... catactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTT
aatttttgcatttttataattttctttattgtgtgttacttgttccatactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAA
cttgttcc CT-rich tract
atttttataattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcattttcatagtactgatctgatgtttgctggtaacttgtgaaatttttgcatttttataattttctttattgtgtgttacttgttccatactccagGCACTCTCCAGAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC