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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caagattcataaatcataataccaatgagatgtcctggtattatgaccatgttattacattttagatgaattcatacttcactcttgtcctttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAATGTATTTTGATGAACTTCTTCCAAGATTGGTGAAAGAAGGAAGTGATG

Basic information

species Zea mays
transcript GRMZM2G124365_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124365_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g55870.1 (Oryza sativa), 3'ss of exon 3
--caagattcataaatcataataccaatgagatgtcctggtattatgaccatgttattacattttagatgaattcatacttc-actcttgtcctttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAATGTATTTTGATGAACTTCTTCCAAGATTGGTGAAAGAAGGAAGTGATG
  ||    |    | ||| | | | |||    |    || | || |     | | | || ||||      |||||||| ||    ||||||| ||| |   ||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
accatctattgagactcacattgctaattgattactgtgctgttgtattgttataagtaaatttggataaaattcatatttttgttcttgtcttttct---agGTTTTGCATCCTATTGCTGATTCTATTAATATCAACAAGGAGATTTGGAAAATGTATTTTGATGAGCTTCTTCCAAGATTAGTGAAAGAAGGAAGTGATG

upper sequence: GRMZM2G124365_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA01G06660.1 (Glycine max), 3'ss of exon 2
caagattcataaatcataataccaatgagatgtcctg-gtattatgaccatgttattacattttagatgaattcatacttcactcttgtcctttgtcata---gGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAATGTATTTTGATGAACTTCTTCCAAGATTGGTGAAAGAAGGAAGTGATG
 ||| || | | |  ||  |     |    |  | |  |  || |     ||  |||| ||||| ||  |||  |   |  | | ||     |  | |||   |||| |||||| |  |||||||||||||||||| |||||  |||||||||| ||||||||  | || || |||||||||||||| ||||  |||  |||||
-aagtttaaaagaaaattgtgttccttttttagcttatgcgttgtatttctg--attatatttt-gactaatctaccttcaattgttccttgtaattatactagGTTCTGCATCACTGTGCTGATTCTATCAATATAAACAATAAGATTTGGAATATGTATTTGAAGGATCTCCTTCCAAGATTGGTAAAAGCGGGAGATGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67040651|gb|CO466906.1|CO466906
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842440|gb|CD982121.1|CD982121
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842677|gb|CD982358.1|CD982358
EST:     CAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: CAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|71304463|gb|DR788345.1|DR788345
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842618|gb|CD982299.1|CD982299
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|67040128|gb|CO466383.1|CO466383
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842683|gb|CD982364.1|CD982364
EST:     TTTCCAAAGATCTGCCTGAGCCCCGGGTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATAT
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATAT
EST: gi|32851768|gb|CD991449.1|CD991449
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|67041520|gb|CO467775.1|CO467775
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842515|gb|CD982196.1|CD982196
EST:     ACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: ACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|149077331|gb|EE166010.2|EE166010
EST:     CCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: CCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842669|gb|CD982350.1|CD982350
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842445|gb|CD982126.1|CD982126
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842206|gb|CD981887.1|CD981887
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|37396226|gb|CF635400.1|CF635400
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842514|gb|CD982195.1|CD982195
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842415|gb|CD982096.1|CD982096
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842444|gb|CD982125.1|CD982125
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|148931381|gb|EC874300.2|EC874300
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|148996150|gb|EE035419.2|EE035419
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|149077332|gb|EE166011.2|EE166011
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842205|gb|CD981886.1|CD981886
EST:     TTTCCAAGGATCTGCCTGAGCNCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|211304787|gb|FL143336.1|FL143336
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32851767|gb|CD991448.1|CD991448
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842783|gb|CD982464.1|CD982464
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842790|gb|CD982471.1|CD982471
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|211304784|gb|FL143333.1|FL143333
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842552|gb|CD982233.1|CD982233
EST:     TTTTCAAGGATCTGCCTGAGCCCCGGGTGCCACCTATGCAATACCCAAGG                         GTTNTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGGAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842439|gb|CD982120.1|CD982120
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842617|gb|CD982298.1|CD982298
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCACCAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842376|gb|CD982057.1|CD982057
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842412|gb|CD982093.1|CD982093
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|211304786|gb|FL143335.1|FL143335
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842684|gb|CD982365.1|CD982365
EST:     NTTCCAAGGATCTGCCTGAGCNCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|89763811|gb|DY690849.1|DY690849
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842408|gb|CD982089.1|CD982089
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842587|gb|CD982268.1|CD982268
EST:     TTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCGCA-GG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAA
genomic: TTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACC-CAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAA
EST: gi|211035045|gb|FL415129.1|FL415129
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGG                         GTTTTGCATCCCATTGCTGATTCTAT
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTAT
EST: gi|67010340|gb|CO439089.1|CO439089
EST:     CCCCGGTTGCCACCTATGCAATACCCAA-G                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: CCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
EST: gi|32842553|gb|CD982234.1|CD982234
EST:     TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACTCAAGG                         GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA
genomic: TTTCCAAGGATCTGCCTGAGCCCCGGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accatgttattacattttagatgaattcatacttcactcttgtcctttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAATGTATTTTGATGAACTTCTTCCAAGATTGGTGAAAGAAGGAAGTGATG
                               cttcactcttgtcctt  CT-rich tract
      ttattacattttagat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caagattcataaatcataataccaatgagatgtcctggtattatgaccatgttattacattttagatgaattcatacttcactcttgtcctttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGAAAATGTATTTTGATGAACTTCTTCCAAGATTGGTGAAAGAAGGAAGTGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - tgtcctg
- - - - - - - - - - - - - - - - - - - - - - - -catgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tacattt