1 5' 3' | 2 5' 3' | 3 5' 3' |
...caaggaatgagtatacattcgaatggcacatagggaatttttccgttccttttcccccacaggattacaggacctcacttctatgtctttgtgactacagAGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACGGCGAAAATCGAACAGCTCAACCAGCAGGCTGCAAGCATCTCCCCAGATG
species | Zea mays |
transcript | GRMZM2G124103_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGAG AGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACGEST: gi|4572810|gb|AI586459.1|AI586459
genomic: CCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGAGgtatgcacac ... gtgactacagAGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACG
EST: CCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGAG AGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACGEST: gi|211160741|gb|FL348114.1|FL348114
genomic: CCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGAGgtatgcacac ... gtgactacagAGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACG
EST: CCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGAG AGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACGEST: gi|37378689|gb|CF626050.1|CF626050
genomic: CCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGAGgtatgcacac ... gtgactacagAGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACG
EST: CCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGAG AGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACGEST: gi|211512286|gb|FL437429.1|FL437429
genomic: CCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGAGgtatgcacac ... gtgactacagAGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACG
EST: CCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGAG AGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACGEST: gi|60347630|gb|DN214603.1|DN214603
genomic: CCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGAGgtatgcacac ... gtgactacagAGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACG
EST: CCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGAG AGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACG
genomic: CCGAATACCGTGCCCAGATGGAGGCTGAGTTCCAGAGGAAGGTCGCAGAGgtatgcacac ... gtgactacagAGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACG
ttccttttcccccacaggattacaggacctcacttctatgtctttgtgactacagAGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACGGCGAAAATCGAACAGCTCAACCAGCAGGCTGCAAGCATCTCCCCAGATG
acctcac putative branch site (score: 12)
tctttgt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaggaatgagtatacattcgaatggcacatagggaatttttccgttccttttcccccacaggattacaggacctcacttctatgtctttgtgactacagAGCAGTGGTGACTCTGGTGCGAACGTCAAGCGTCTCGAGGAAGAGACAACGGCGAAAATCGAACAGCTCAACCAGCAGGCTGCAAGCATCTCCCCAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG