1 5' 3' | 2 5' 3' | 3 5' 3' |
...aagttgtcgctccatttcatattttcaatgcctatggcatgaattttgccttatgcgaacatgacagttatctaaattgtgtttatgttcttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGTACAGCATGAAGATCTGACAGTACCTGCTTCTGGTTCAAGCGGGTTGAACA
species | Zea mays |
transcript | GRMZM2G123807_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGTAEST: gi|113681377|gb|DW840071.1|DW840071
genomic: CCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttgag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGTA
EST: GTCTCTGCTGACATGTCAAACCTTCCAGCAT GTTCGTTTGTGGTGCGCATAAAAGACATGAACTGTGAGAAACGATACAAGTEST: gi|211101164|gb|FL105400.1|FL105400
genomic: GTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttgag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAA-GACATGAACTGTGAGAAACGATACAAGT
EST: CTTAGGAATTCCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGTAEST: gi|32925360|gb|CF030172.1|CF030172
genomic: CTTAGGAATTCCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttgag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGTA
EST: CTTAGGAATTCCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCAT GTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGT
genomic: CTTAGGAATTCCGTGTTCTGTCTCTGCTGACATGTCAAACCTTCCAGCATgtaagttgag ... ttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGT
ttgccttatgcgaacatgacagttatctaaattgtgtttatgttcttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGTACAGCATGAAGATCTGACAGTACCTGCTTCTGGTTCAAGCGGGTTGAACA
tgttctt CT-rich tract
taaattgtgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagttgtcgctccatttcatattttcaatgcctatggcatgaattttgccttatgcgaacatgacagttatctaaattgtgtttatgttcttgatgacagGTTCGTTTGTGGTGCGCATAAAGACATGAACTGTGAGAAACGATACAAGTACAGCATGAAGATCTGACAGTACCTGCTTCTGGTTCAAGCGGGTTGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - gctccat
- - - - - - - -ttcatat
- - - - - - - - - - - - -caatgcc
- - - - - - - - - - - - - - - - - - gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttt