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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccttaatccccttccccatctttcttcctctccccactacctgtctgttgttcactcactcaccttttgaaccatgttttcattccagATGGTGACTATGGCAATGTTCTTTCGAATCATGGTGGATCGAGTTATCAGGGCCAACCAACAGAGACGATGTACGCACAATGCTTGCAGGCAAACCCTGA

Basic information

species Zea mays
transcript GRMZM2G123537_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123537_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g57390.1 (Oryza sativa), 3'ss of exon 3
gtatccttaatccccttccccatctttcttcctctccccactacctgtctgttgttcactcactcaccttttgaaccatgtttt--cattccagATGGTGACTATGGCAATGTTCTTTCGAATCATGGTGGATCGAGTTATCAGGGCCAACCAACAGAGACGATGTACGCACAATGCTTGCAGGCAAACCCTGA
          | ||  || |  |  || |||  |   | |   |||  || || ||       |    |||||| || | ||||  |  | |||||||||| ||||  ||| ||||||||||||| || |||||  ||| ||||||||||||||  ||| | ||||| || | || ||||||||||||| ||||
---------gtacctctctcttttctttttctccaatctatcccct-cctattatt-----gtttgagttttgacccttttttttcctgtgcagATGGTGAATATGTTAATCTTCTTTCGAATCAAGGGGGATCTGGTTTTCAGGGCCAACCAATGGAGTCAATGTATGCTCCATACTTGCAGGCAAACTCTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccactacctgtctgttgttcactcactcaccttttgaaccatgttttcattccagATGGTGACTATGGCAATGTTCTTTCGAATCATGGTGGATCGAGTTATCAGGGCCAACCAACAGAGACGATGTACGCACAATGCTTGCAGGCAAACCCTGA
                       cactcac  putative branch site (score: 2)
                                           ttttcattcc  putative PPT
                                           ttttcatt  TA-rich tract