Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtgccgcctcggccgctccctccctagtccctacctacttagctcgctgcttaaaccctaagcgccacactgcactgcatgaaagaatcctgggctaacactcttcatccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGAGCATGTCGTCGTCCGCGCTGGTCTGCTTATCGGCGCCGCCGCCGGTGC

Basic information

species Zea mays
transcript GRMZM2G123140_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123140_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g42490.1 (Oryza sativa), 3'ss of exon 5
gttggtgccgcctcggccgctccctccctagtccctacctacttagctcgctgcttaaaccctaagcgccacactgcactgcatgaaagaatcctgggctaacactcttcatccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGC------CGACAGCCGAGCATGTCGTCGTCCGCGCTGGTCTGCTTATCGGCGCCGCCGCCGGTGC
                              ||| ||| || | ||   | || | ||  || |     || || | | |  ||   || | ||||    ||  |  |||| |   | ||||| ||||||||||| |||||||| ||||| ||||||||||||      || ||||||    ||||| |||| || |||  |||| | |||||||||||||      
------------------------------gtcgctagctccctaaaaccctaccta--ccattcattcc-caattcccaacacataatactcctcctata-tatgcttcctggctgcagCTTGACCGCTTGGCCTGCATCGCCACCCGCTACGGCGGCGGCGGCGGACGGCAGCCGGTGCTGTCGACGTCGGCCCTGAGCTGCATCTCGGCGCCGCCGC------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76280818|gb|DV020386.1|DV020386
EST:     GGTGCGCTCCAGGTGG-CAAGGACGAGGACATGGATCAGCTGGAGATGGAGATGGAGCTCAGCGGCGGCTCCGGGAGCGGCCACCTGGACGGCCTGCTCAGCT
genomic: GGTGCGCTCCAGGTGGCCAAGGACGAGGACATGGATCAGCTGGAGATGGAGATGGAGCTCAGCGGCGGCTCCGGGAGCGGCCACCTGGACGGCCTGCTCAGCT
EST: gi|71444077|gb|DR825127.1|DR825127
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|149087104|gb|EE176643.2|EE176643
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|50324011|gb|CO519137.1|CO519137
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|76294065|gb|DV033633.1|DV033633
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|50335383|gb|CO530509.1|CO530509
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|93011830|gb|EB637350.1|EB637350
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|71432528|gb|DR813578.1|DR813578
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|71764164|gb|DR962101.1|DR962101
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|76284797|gb|DV024365.1|DV024365
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|93281069|gb|EB673333.1|EB673333
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|76929427|gb|DV172012.1|DV172012
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|86469088|gb|DY235458.1|DY235458
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|71315704|gb|DR794479.1|DR794479
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|78074346|gb|DV502780.1|DV502780
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|78075704|gb|DV504138.1|DV504138
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|148938577|gb|EC882901.2|EC882901
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|148953385|gb|EE152879.2|EE152879
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|91055340|gb|EB165758.1|EB165758
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|50330271|gb|CO525397.1|CO525397
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|78103736|gb|DV522164.1|DV522164
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|76021621|gb|DT948791.1|DT948791
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|86472399|gb|DY238769.1|DY238769
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|78103849|gb|DV522277.1|DV522277
EST:     CATCATGGGTGCGCTCCAGGGTGGCCAAGGACGAGGACATGGATCAGCTGGAGATGGAGATGGAGCTCAGCGGCGGCTCCGGGAGCGGCCACCTGGACGGCCTGCTCAGCT
genomic: CATCATGGGTGCGCTCCA-GGTGGCCAAGGACGAGGACATGGATCAGCTGGAGATGGAGATGGAGCTCAGCGGCGGCTCCGGGAGCGGCCACCTGGACGGCCTGCTCAGCT
EST: gi|71756854|gb|DR954791.1|DR954791
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|71329726|gb|DR801584.1|DR801584
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|78084627|gb|DV513020.1|DV513020
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|89250163|gb|DY621949.1|DY621949
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|78083048|gb|DV511441.1|DV511441
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|71446315|gb|DR827365.1|DR827365
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|78104189|gb|DV522607.1|DV522607
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|50322570|gb|CO517696.1|CO517696
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|93013152|gb|EB638672.1|EB638672
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|71761861|gb|DR959798.1|DR959798
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|76291558|gb|DV031126.1|DV031126
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|50336561|gb|CO531687.1|CO531687
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|149071579|gb|EE159971.2|EE159971
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|78124125|gb|DV542509.1|DV542509
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|76909798|gb|DV163540.1|DV163540
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|93013982|gb|EB639502.1|EB639502
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGGTACGGCGGCGGCCGACAGCC
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCC-GGTACGGCGGCGGCCGACAGCC
EST: gi|88754724|gb|DY538865.1|DY538865
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|78114319|gb|DV532708.1|DV532708
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|88756590|gb|DY540731.1|DY540731
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|76922345|gb|DV168961.1|DV168961
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|78076344|gb|DV504778.1|DV504778
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|71773680|gb|DR971577.1|DR971577
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|50323712|gb|CO518838.1|CO518838
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|91872049|gb|EB402006.1|EB402006
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|89246976|gb|DY618762.1|DY618762
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|78116122|gb|DV534510.1|DV534510
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|148954731|gb|EC900184.2|EC900184
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|33467199|gb|CF244248.1|CF244248
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|78121680|gb|DV540064.1|DV540064
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|76283507|gb|DV023075.1|DV023075
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|78113181|gb|DV531575.1|DV531575
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|101383246|gb|EB813679.1|EB813679
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|76012967|gb|DT940137.1|DT940137
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|71426041|gb|DR807091.1|DR807091
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|149108465|gb|EE189665.2|EE189665
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|148974605|gb|EE025399.2|EE025399
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|71763213|gb|DR961150.1|DR961150
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|101385658|gb|EB814877.1|EB814877
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|148974497|gb|EE025280.2|EE025280
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|78112023|gb|DV530419.1|DV530419
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|71430905|gb|DR811955.1|DR811955
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|50333731|gb|CO528857.1|CO528857
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|71328778|gb|DR801073.1|DR801073
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|91054309|gb|EB164727.1|EB164727
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|71758544|gb|DR956481.1|DR956481
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|71769102|gb|DR967039.1|DR967039
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|38687296|gb|CK144327.1|CK144327
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
EST: gi|71317347|gb|DR795368.1|DR795368
EST:     CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAG                         CTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG
genomic: CGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 135

CAACGTAGTCTGCCCCAACTGCGGCCACGCCGCCGTCCTCGGCGAGATGTCGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGAGCATGTCGTCGTCCGCGCTGGTCTGCTTATCGGCGCCGCCGCCGGTGC


Block sizes: 49 (upstream exon), 39 (downstream exon)
Score: 6

CAACGTAGTCTGCCCCAACTGCGGCCACGCCGCCGTCCTCGGCGAGATGTCGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGAGCATGTCGTCGTCCGCGCTGGTCTGCTTATCGGCGCCGCCGCCGGTGC


Block sizes: 19 (upstream exon), 31 (downstream exon)
Score: 1

CAACGTAGTCTGCCCCAACTGCGGCCACGCCGCCGTCCTCGGCGAGATGTCGTACGAGGAGCAGCAGCTCCGCATCGAAAACGCTAGGCTCAAGGACGAGgttggtgccg ... atccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGAGCATGTCGTCGTCCGCGCTGGTCTGCTTATCGGCGCCGCCGCCGGTGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgccacactgcactgcatgaaagaatcctgggctaacactcttcatccatccagCTCGACCGCTTGGCGTGCATCGCGACCCGGTACGGCGGCGGCCGACAGCCGAGCATGTCGTCGTCCGCGCTGGTCTGCTTATCGGCGCCGCCGCCGGTGC
                               ggctaac  putative branch site (score: 1)
                                       ctcttcatccatcc  CT-rich tract
                    aaagaat  TA-rich tract