1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgcccatacttccatttctttaaacatgattccatggaacctctttatgttagtaccctgtggactgtggttcagtcttaaaactagtctaatttatactgtacgttgcagGAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGCTACCATGTGTACTGCATCAAGCAGTGGCTCTCGCAGAAGAACATTTGCC
species | Zea mays |
transcript | GRMZM2G122223_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAA GAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGCEST: gi|91048468|gb|EB158886.1|EB158886
genomic: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAAgtatgcccat ... tacgttgcagGAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGC
EST: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAA GAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGCEST: gi|60343467|gb|DN210440.1|DN210440
genomic: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAAgtatgcccat ... tacgttgcagGAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGC
EST: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAA GAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGCEST: gi|9733598|gb|BE512350.1|BE512350
genomic: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAAgtatgcccat ... tacgttgcagGAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGC
EST: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAA GAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGCEST: gi|76933767|gb|DV173581.1|DV173581
genomic: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAAgtatgcccat ... tacgttgcagGAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGC
EST: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAA GAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGCEST: gi|211136817|gb|FL064026.1|FL064026
genomic: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAAgtatgcccat ... tacgttgcagGAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGC
EST: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAA GAAGAATTTGAAACAAATGAAGAGATGGEST: gi|9731032|gb|BE509784.1|BE509784
genomic: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAAgtatgcccat ... tacgttgcagGAAGAATTTGAAACAAATGAAGAGATGG
EST: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAA GAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGCEST: gi|88754725|gb|DY538866.1|DY538866
genomic: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAAgtatgcccat ... tacgttgcagGAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGC
EST: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAA GAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGCEST: gi|40334279|gb|CK368349.1|CK368349
genomic: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAAgtatgcccat ... tacgttgcagGAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGC
EST: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAA GAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGCEST: gi|37377713|gb|CF625486.1|CF625486
genomic: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAAgtatgcccat ... tacgttgcagGAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGC
EST: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAA GAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGCEST: gi|76933772|gb|DV173582.1|DV173582
genomic: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAAgtatgcccat ... tacgttgcagGAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGC
EST: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAA GAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGCEST: gi|211344911|gb|FL339324.1|FL339324
genomic: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAAgtatgcccat ... tacgttgcagGAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGC
EST: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAA GAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGC
genomic: GTTCCTTACGGTTCGCAACAGAAATGGAAAGAAAATGCAGCATTTGCCAAgtatgcccat ... tacgttgcagGAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGC
cctgtggactgtggttcagtcttaaaactagtctaatttatactgtacgttgcagGAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGCTACCATGTGTACTGCATCAAGCAGTGGCTCTCGCAGAAGAACATTTGCC
gtctaat putative branch site (score: 96)
ttaaaactagtctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcccatacttccatttctttaaacatgattccatggaacctctttatgttagtaccctgtggactgtggttcagtcttaaaactagtctaatttatactgtacgttgcagGAAGAATTTGAAACAAATGAAGAGATGGGAAGGCTAGACTGTGGCCATAGCTACCATGTGTACTGCATCAAGCAGTGGCTCTCGCAGAAGAACATTTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC