1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatattttcccttactatattctactctctgtagcaggaggtacacaatctaattttattgacgcattgcttgtagCTTCATGGAGATAGCTCCCGAGAACTACTTCCTCTGCTTTGGAAGAACAACAGGATTATATATGTGCTAAATGCTGATGAGGATGGTAAACTTATCAATG
species | Zea mays |
transcript | GRMZM2G122198_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTAGTACTATCTTGACAGCATCTGATTCATGCAACCTCGATCTTATCCAG CTTCATGGAGATAGCTCCCGAGAACTACTTCCTCTGCTTTGGAAGAACAACEST: gi|111990584|gb|EE332031.1|EE332031
genomic: GTAGTACTATCTTGACAGCATCTGATTCATGCAACCTCGATCTTATCCAGgtatattttc ... ttgcttgtagCTTCATGGAGATAGCTCCCGAGAACTACTTCCTCTGCTTTGGAAGAACAAC
EST: GTAGTACTATCTTGACAGCATCTGATTCATGCAACCTCGATCTTATCCAG CTTCATGGAGATAGCTCCCGAGAACTACTTCCTCTGCTTTGGAAGAACAACEST: gi|89248552|gb|DY620338.1|DY620338
genomic: GTAGTACTATCTTGACAGCATCTGATTCATGCAACCTCGATCTTATCCAGgtatattttc ... ttgcttgtagCTTCATGGAGATAGCTCCCGAGAACTACTTCCTCTGCTTTGGAAGAACAAC
EST: GTAGTACTATCTTGACAGCATCTGATTCATGCAACCTCGATCTTATCCAG CTTCATGGAGATAGCTCCCGAGAACTACTTCCTCTGEST: gi|32912560|gb|CF017372.1|CF017372
genomic: GTAGTACTATCTTGACAGCATCTGATTCATGCAACCTCGATCTTATCCAGgtatattttc ... ttgcttgtagCTTCATGGAGATAGCTCCCGAGAACTACTTCCTCTG
EST: GTAGTACTATCTTGACAGCATCTGATTCATGCAACCTCGATCTTATCCAG CTTCATGGAGATAGCTCCCGAGAACTACTTCCTCTGCTTTGGAAGAACAACEST: gi|211023448|gb|FL441106.1|FL441106
genomic: GTAGTACTATCTTGACAGCATCTGATTCATGCAACCTCGATCTTATCCAGgtatattttc ... ttgcttgtagCTTCATGGAGATAGCTCCCGAGAACTACTTCCTCTGCTTTGGAAGAACAAC
EST: GTAGTACTATCTTGACAGCATYTGATTCATGCAACCTCGATYTTATCCAG CTTCATGGAGATAGCTCCCGAGAACTACTTCCTYTGCTTTGGAAGAACAAC
genomic: GTAGTACTATCTTGACAGCATCTGATTCATGCAACCTCGATCTTATCCAGgtatattttc ... ttgcttgtagCTTCATGGAGATAGCTCCCGAGAACTACTTCCTCTGCTTTGGAAGAACAAC
ctactctctgtagcaggaggtacacaatctaattttattgacgcattgcttgtagCTTCATGGAGATAGCTCCCGAGAACTACTTCCTCTGCTTTGGAAGAACAACAGGATTATATATGTGCTAAATGCTGATGAGGATGGTAAACTTATCAATG
tattgac putative branch site (score: 17)
acaatctaattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattttcccttactatattctactctctgtagcaggaggtacacaatctaattttattgacgcattgcttgtagCTTCATGGAGATAGCTCCCGAGAACTACTTCCTCTGCTTTGGAAGAACAACAGGATTATATATGTGCTAAATGCTGATGAGGATGGTAAACTTATCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG