1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctaatcattattgaatcattgagttagtgtttgcatatagtcatacacttttgggacatcattagggctatgtctaaaacgtcgtggtctttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAAATTGTTGGAGCCACAAGATTGTGTAGCTCACATTCTTCCAGTCATTGT
species | Zea mays |
transcript | GRMZM2G122135_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAEST: gi|6564198|gb|AW231820.1|AW231820
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTA
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAEST: gi|5566949|gb|AI881860.1|AI881860
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTA
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAEST: gi|149081317|gb|EE170431.2|EE170431
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTA
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTEST: gi|67034361|gb|CO462911.1|CO462911
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTT
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAEST: gi|14191184|gb|BG833414.1|BG833414
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTA
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAEST: gi|13126723|gb|BG317293.1|BG317293
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTA
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAEST: gi|14191183|gb|BG833413.1|BG833413
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTA
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAEST: gi|21843193|gb|BQ703774.1|BQ703774
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTA
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAEST: gi|20803006|gb|BQ294056.1|BQ294056
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTA
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAEST: gi|32941448|gb|CF046267.1|CF046267
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTA
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTTGCTGTTGAAGGTTGTGCTGGTCTTGGTAEST: gi|13126316|gb|BG316886.1|BG316886
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTA
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAEST: gi|211254024|gb|FL158973.1|FL158973
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTA
EST: TCATTTGAAGACAGAAATA-TGTCAATATTTGATGACTTNACCCA-GATG ATCAAGATTCANTGCGGTTGTTTGGCTGTTGAAAGTGGTGCTGCEST: gi|31361797|gb|CD446154.1|CD446154
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTT-GGCTGTTGAAGGTTGTGCTGC
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG GEST: gi|31361797|gb|CD446154.1|CD446154
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcag-
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG GEST: gi|32929909|gb|CF034721.1|CF034721
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcag-
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAEST: gi|32928593|gb|CF033405.1|CF033405
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTA
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAEST: gi|67022275|gb|CO451024.1|CO451024
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTA
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCANTGCGTTTGTTGGCTGTTGAAGGNNTGTGCTGCTCTTGGTEST: gi|13126270|gb|BG316840.1|BG316840
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGT-TGTGCTGCTCTTGGT
EST: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATG ATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGGTGTGCTGCTCTTGGTA
genomic: TCATTTGAAGACAGAAATAATGTCAATATTTGATGACTTAACCCAAGATGgtacattttc ... ttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTA
cacttttgggacatcattagggctatgtctaaaacgtcgtggtctttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAAATTGTTGGAGCCACAAGATTGTGTAGCTCACATTCTTCCAGTCATTGT
gtctaaa putative branch site (score: 3)
tctttattttc putative PPT
tctttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaatcattattgaatcattgagttagtgtttgcatatagtcatacacttttgggacatcattagggctatgtctaaaacgtcgtggtctttattttcagATCAAGATTCAGTGCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAAATTGTTGGAGCCACAAGATTGTGTAGCTCACATTCTTCCAGTCATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA