Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtactcgttcccagcttgcactttaccgtttgtcattgtcaagccagagaagaaccaattttttatggaacatgcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCGACTTCTGACAAAGTGAATCGAATTTGCATACCTTACACCTTTGGAAAGT

Basic information

species Zea mays
transcript GRMZM2G122039_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122039_T06 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os11g06340.1 (Oryza sativa), 3'ss of exon 3
------------------------------gtaagtactcgttcccagcttgcactttaccg-----tttgtcattgtcaagccagag-aagaaccaattttttatggaacatgcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCGACTTCTGACAAAGTGAATCGA---ATTTGCATA-CCTTACAC-CTTTGGAAAGT-----
                              | |  | || |  || | |      ||||  |      |   |||    |||| ||   || |||  ||||| | |||    ||||||||||||||||| | || ||| || |||||||||||||||      ||   | ||| |||| ||    ||||| | |    |||||| || ||||   | |  | |||| |     
gtaagtatctgcatgtgtgtgtgcaatatcgcatat-ctggaaccaaacaaatgatttatggagaagctctgcatatataagctaggttaataacatattttctgtgggg--tgcatctgcaggtagCACCGAAACTCCTTGAGAAGCTCAAATGAT------GACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56382672|gb|CV985341.1|CV985341
EST:     AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGT                         GTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG
genomic: AACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactc ... gcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtcattgtcaagccagagaagaaccaattttttatggaacatgcatctgcagGTAGCATCAAAGCTCTTTAAGAAGCTCAAATGATTTGTGCGATGTGATGCGACTTCTGACAAAGTGAATCGAATTTGCATACCTTACACCTTTGGAAAGT
                        aaccaattttttat  TA-rich tract