1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatatatacacactgacgattgtgaacaacgcaatggtctcaatttctactcacacggccggccgcggcctctcgttttcgtgtcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTCAAGGTGGAGGTCCTCGTGGTCATTGGCCATAGCTGCTGCGGTGGCATCA
species | Zea mays |
transcript | GRMZM2G121878_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAG ACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTCEST: gi|5525295|gb|AI861134.1|AI861134
genomic: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAGgtatatatac ... tcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTC
EST: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAG ACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTCEST: gi|8318768|gb|BE025333.1|BE025333
genomic: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAGgtatatatac ... tcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTC
EST: AGGCCTTCACCGTTCGCAACATCGCCGCCATGGTCCCAGGCTACGACAAG ACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCCCTCEST: gi|5525294|gb|AI861133.1|AI861133
genomic: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAGgtatatatac ... tcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTC
EST: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAG ACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTCEST: gi|8318769|gb|BE025334.1|BE025334
genomic: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAGgtatatatac ... tcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTC
EST: AGGCCTTCACCGTTCGCAACATCGCCGCCATGGTCCCAGGCTACGACAAG ACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCCCTCEST: gi|13515934|gb|BG518210.1|BG518210
genomic: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAGgtatatatac ... tcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTC
EST: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAG ACCAAGCTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTEST: gi|7031284|gb|AW461022.1|AW461022
genomic: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAGgtatatatac ... tcgactgcagACCAAG-TACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCT
EST: AGGCCTTCACCGTTCGCAACATCGCCGCCATGGTCCCAGGCTACGACAAG ACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCCCTCEST: gi|211520600|gb|FL477904.1|FL477904
genomic: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAGgtatatatac ... tcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTC
EST: CAGGCTACGACAAG ACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCCCTCEST: gi|10697521|gb|BE997245.1|BE997245
genomic: CAGGCTACGACAAGgtatatatac ... tcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTC
EST: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAG ACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTCEST: gi|13558507|gb|BG549863.1|BG549863
genomic: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAGgtatatatac ... tcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTC
EST: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAG ACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTCEST: gi|6827008|gb|AW330651.1|AW330651
genomic: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAGgtatatatac ... tcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTC
EST: AGGCCTTCACCGTTCGCAACATCGCCGCCATGGTCCCAGGCTACGACAAG ACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCCCTC
genomic: AGGCCTTCACCGTTCGCAACATAGCCGCCATGGTCCCAGGCTACGACAAGgtatatatac ... tcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTC
ctcaatttctactcacacggccggccgcggcctctcgttttcgtgtcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTCAAGGTGGAGGTCCTCGTGGTCATTGGCCATAGCTGCTGCGGTGGCATCA
tactcac putative branch site (score: 67)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatatacacactgacgattgtgaacaacgcaatggtctcaatttctactcacacggccggccgcggcctctcgttttcgtgtcgactgcagACCAAGTACACCGGCATCGGGTCCGCCATCGAGTACGCTGTGTGCGCTCTCAAGGTGGAGGTCCTCGTGGTCATTGGCCATAGCTGCTGCGGTGGCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC