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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggggatttaatctcccctcaaccgaacaaagccttaccaggaagggttttactggattgtattgtgaggtttgtgtgactatatatctgtctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG

Basic information

species Zea mays
transcript GRMZM2G121456_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121456_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g19510.1 (Oryza sativa), 3'ss of exon 3
ggggatttaatctcccctcaaccgaacaaagccttaccaggaagggttttactggattgtattgtgaggtttgtgtgactatatatctgtctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG
                  |    | || |     |  ||  |||  | ||  ||||  ||  |||| |   ||| ||||| | | |   | |  |  ||||| ||||| ||||| || || ||||| |||||||||||||| |||||||| || || || ||||| || ||||| || || ||||| || |||
---------------gtacgggagcactagattgttgcac-aagtttatttgtggagggttctgtgtg--ctgtctgactctgtgtgattgtgga-acagAGGATTATCCGGTGTGGTGGACCCGTGGAGGATGATATGGCGAACATCATCGTTGCCCAGCTGCTATATCTCGATGCCATCGATCCTAACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110519563|gb|EE023896.1|EE023896
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCCGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|149081623|gb|EE170768.2|EE170768
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AAAATTATTTCGG-GCGGAGGCCCCGTTGAGGATGAAATGGCCAAC
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATT-CGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAAC
EST: gi|211481382|gb|FL023994.1|FL023994
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|74237088|gb|DT645002.1|DT645002
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|78092088|gb|DV520462.1|DV520462
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|211481381|gb|FL023993.1|FL023993
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGC-AACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|19821991|gb|BQ048015.1|BQ048015
EST:     CCATGGTGATGGTGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCTGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|71436538|gb|DR817588.1|DR817588
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|148939986|gb|EC884717.2|EC884717
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|61119391|gb|DN560352.1|DN560352
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|211478511|gb|FL023987.1|FL023987
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|32913968|gb|CF018780.1|CF018780
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCTGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|149088221|gb|EE177331.2|EE177331
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|101399114|gb|EB821430.1|EB821430
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|78111070|gb|DV529467.1|DV529467
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|76919121|gb|DV167599.1|DV167599
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|71427481|gb|DR808531.1|DR808531
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|71445134|gb|DR826184.1|DR826184
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|74245787|gb|DT653701.1|DT653701
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|148939985|gb|EC884716.2|EC884716
EST:     GTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGGGGAGGGCCCG-TGAGGGATGATATGGCCAACATCAT
genomic: GTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGA-GGATGATATGGCCAACATCAT
EST: gi|78090189|gb|DV518563.1|DV518563
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|148938546|gb|EC882867.2|EC882867
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|19822147|gb|BQ048171.1|BQ048171
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCTGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|50338176|gb|CO533302.1|CO533302
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|101400189|gb|EB821914.1|EB821914
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|93282145|gb|EB674409.1|EB674409
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|76012850|gb|DT940020.1|DT940020
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|86472628|gb|DY238998.1|DY238998
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCATCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|211478510|gb|FL023986.1|FL023986
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|93282646|gb|EB674910.1|EB674910
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|148934818|gb|EC878864.2|EC878864
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|113702266|gb|EE679770.1|EE679770
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCTGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|101399344|gb|EB821545.1|EB821545
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|71307773|gb|DR790105.1|DR790105
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|211478514|gb|FL023990.1|FL023990
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCCGTTGAAGATGATATGGCCAACATCATG
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT
EST: gi|26455779|gb|CA827362.1|CA827362
EST:     CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCAC                         AGAATTATTCGGTGCGGAGGCCCTGTTGAGGATGATATGGCCAACATCATT
genomic: CCATGGTGATGGAGCGGTTCCAGAGCGTCGTCAGTCAGCTTTTCCAGCACgtacgacggc ... ctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttactggattgtattgtgaggtttgtgtgactatatatctgtctctatgcagAGAATTATTCGGTGCGGAGGCCCCGTTGAGGATGATATGGCCAACATCATTGTAGCACAACTGCTCTACCTCGACGCTATTGATCCCAATAAG
                                        tctgtctct  CT-rich tract
                                actatatat  TA-rich tract