1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atgccctttttcatagttatgtttaaattcagaaacacatgaattttacaagcattctgagttgcatgtggcccttttcctgagctatgtaaagaactacAACATCAACAAGAGCTGGCAGAACTAAGATGACTGTTCCCGTCGCTCCTTCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG
species | Zea mays |
transcript | GRMZM2G121176_T03 |
intron # | 3 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GAGAAGGTATTTCATCCTCTGGAAGAGGACTCTTGTTCTGTGACATCCTC AACATCAACAAGAGCTGGCAGAACTAAGATGACTGTTCCCGTCGCTCCTTC
genomic: GAGAAGGTATTTCATCCTCTGGAAGAGGACTCTTGTTCTGTGACATCCTCatatcctttt ... aaagaactacAACATCAACAAGAGCTGGCAGAACTAAGATGACTGTTCCCGTCGCTCCTTC
ttacaagcattctgagttgcatgtggcccttttcctgagctatgtaaagaactacAACATCAACAAGAGCTGGCAGAACTAAGATGACTGTTCCCGTCGCTCCTTCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG
ttcctgagc putative branch site
tatgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgccctttttcatagttatgtttaaattcagaaacacatgaattttacaagcattctgagttgcatgtggcccttttcctgagctatgtaaagaactacAACATCAACAAGAGCTGGCAGAACTAAGATGACTGTTCCCGTCGCTCCTTCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
-tgccctt
- - - - - - - - ttatgtt
- - - - - - - - - - - - - - - - - -cacatga
- - - - - - - - - - - - - - - - - - - - - - - - - - cattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt