1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgctctctgttgcagtatttctctggcatttgctctagagtgaaacaattgtactttatctgtttatcatatatattgtgatttcgttctcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACCATACCAGGAAGTCCTGGTCTTTGAG
species | Zea mays |
transcript | GRMZM2G120578_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG GAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGGAAATCAEST: gi|148956445|gb|EC902269.2|EC902269
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGG-AAATCA
EST: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG GAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACEST: gi|78117805|gb|DV536192.1|DV536192
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCAC
EST: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG GAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACEST: gi|148931937|gb|EC875166.2|EC875166
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCAC
EST: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG GAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACEST: gi|148930370|gb|EE284813.2|EE284813
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCAC
EST: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG GAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACEST: gi|211322828|gb|FL013194.1|FL013194
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCAC
EST: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG GAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACEST: gi|149072878|gb|EE161134.2|EE161134
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCAC
EST: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG GAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACEST: gi|211322835|gb|FL013201.1|FL013201
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCAC
EST: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG GAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACEST: gi|89756410|gb|DY686460.1|DY686460
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCAC
EST: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG GAGAGGCCCATTCCTTGAAAGTGGAGA-CATAEST: gi|211322829|gb|FL013195.1|FL013195
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATA
EST: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG GAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACEST: gi|32865849|gb|CF005531.1|CF005531
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCAC
EST: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG GAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACEST: gi|28188224|gb|CB179834.1|CB179834
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCAC
EST: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG GAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACEST: gi|211322831|gb|FL013197.1|FL013197
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCAC
EST: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG GAGAGGCCCATTCCTTGAAAGTGGAGAACATATTEST: gi|148963955|gb|EE015081.2|EE015081
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATT
EST: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG GAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCAC
genomic: GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAGgtacttggcc ... tcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCAC
acaattgtactttatctgtttatcatatatattgtgatttcgttctcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACCATACCAGGAAGTCCTGGTCTTTGAG
tttcgttctc CT-rich tract
tttatctgtttatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctctctgttgcagtatttctctggcatttgctctagagtgaaacaattgtactttatctgtttatcatatatattgtgatttcgttctcatatatagGAGAGGCCCATTCCTTGAAAGTGGAGAACATATTGTACCAGGGGAAATCACCATACCAGGAAGTCCTGGTCTTTGAG
- - - -ctgttgc
- - - - - - - - - - - - - -catttgc
- - - - - - - - - - - - - - - - - - - - - -aaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgatt