1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgagtctttgagatgctccttgacctgctagttagagatctttattttcctaattaagtataattatgaacatggtcaaattaatcctatctatgggcagGCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTCCTTGTTTTTAA
species | Zea mays |
transcript | GRMZM2G120329_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGTGGTGTCTTTAATAACATAAATGGCTGCATTTCTACAGGGGAAAGAG -CAAATGTCTATCATGGCA-CAAAGACGGATGGCCAGGAGCTTGCAATTAEST: gi|78115075|gb|DV533463.1|DV533463
genomic: CCGTGGTGTCTTTAATAACATAAATGGCTGCATTTCTACAGGG-AAAGAGgtagctttaa ... ctatgggcagGCAAATGTCTATCATG-CAACAAAGACGGATGGCCAGGAGCTTGCAATTA
EST: ACCGTGGTGTCTTTAATAACATAAATGGCTGCATTTCTACAGGGAAAGAG GCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAA-
genomic: ACCGTGGTGTCTTTAATAACATAAATGGCTGCATTTCTACAGGGAAAGAGgtagctttaa ... ctatgggcagGCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAA
tttcctaattaagtataattatgaacatggtcaaattaatcctatctatgggcagGCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTCCTTGTTTTTAA
tcctatct CT-rich tract
taattaagtataatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagtctttgagatgctccttgacctgctagttagagatctttattttcctaattaagtataattatgaacatggtcaaattaatcctatctatgggcagGCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTCCTTGTTTTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - -tgctcct
- - - - - - - - - - - -cctgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catggtc