1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttctacactggattgctcctgccacctgaaatacttaattgcatatagaataagattggtgtgtctcatttagtcttctggtgatcatatgcattttagGTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACGCTTAAGGAGGGTGACACATGGATGTTCGCTGGCCATCAAGTTCTTGTAC
species | Zea mays |
transcript | GRMZM2G120300_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAG GTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACTEST: gi|111991062|gb|EE331971.1|EE331971
genomic: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAGgtatagcttt ... tgcattttagGTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACG
EST: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAG GTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACGEST: gi|5846865|gb|AI999948.1|AI999948
genomic: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAGgtatagcttt ... tgcattttagGTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACG
EST: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAG GTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACTEST: gi|60400379|gb|DN233186.1|DN233186
genomic: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAGgtatagcttt ... tgcattttagGTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACG
EST: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAG GTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACGEST: gi|76290103|gb|DV029671.1|DV029671
genomic: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAGgtatagcttt ... tgcattttagGTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACG
EST: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAG GTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACGEST: gi|6194731|gb|AW146835.1|AW146835
genomic: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAGgtatagcttt ... tgcattttagGTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACG
EST: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAG GTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACTEST: gi|211480476|gb|FL101272.1|FL101272
genomic: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAGgtatagcttt ... tgcattttagGTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACG
EST: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAG GTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACGEST: gi|6445407|gb|AW179475.1|AW179475
genomic: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAGgtatagcttt ... tgcattttagGTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACG
EST: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAG GTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACGEST: gi|67017612|gb|CO446361.1|CO446361
genomic: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAGgtatagcttt ... tgcattttagGTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACG
EST: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAG GTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACG
genomic: ATGATCATACTGGTGGAAACTTGGAATTGAAGGCAAAATATGGTGCAAAGgtatagcttt ... tgcattttagGTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACG
atagaataagattggtgtgtctcatttagtcttctggtgatcatatgcattttagGTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACGCTTAAGGAGGGTGACACATGGATGTTCGCTGGCCATCAAGTTCTTGTAC
ataagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctacactggattgctcctgccacctgaaatacttaattgcatatagaataagattggtgtgtctcatttagtcttctggtgatcatatgcattttagGTAATTGGTTCTGAGAAGGATAAGGACAGAATACCTGGCATTGACATCACGCTTAAGGAGGGTGACACATGGATGTTCGCTGGCCATCAAGTTCTTGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA