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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtattcctcccatttttatggtcaatggatgctattcctcatccagaatcatgatttaaatattcatctgagatgatattcttgagcttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAGGTTAGTACATTCTTCTAGACTA

Basic information

species Zea mays
transcript GRMZM2G119791_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119791_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os11g36420.1 (Oryza sativa), 3'ss of exon 3
gtcagtattcctc-ccatttttatggtcaatggatgctattcctcatccagaatcatgatttaaatattcatctgagatgatattcttgagcttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAGGTTAGTACATTCTTCTAGACTA
|| ||||||||    ||| || |    || |   | || ||         |  || |     |||  | ||    ||||   | |  |      || ||||||| ||  ||||||||||   ||||||||| ||||||||||| |||||||||||||||||||||||  |||||||||||                      
gtaagtattccctgtcatgttcacatgcagttacttctgttaacggatttgtgtccttcaacaaaggtccactcaagatatcacttctcttgacttatgcagTACAACACTCAGTTCAAATATTTTGAACCACTAGAATACAACTATGATGTCTGTGAAACTATCCTTCTGTGGGAACAG----------------------

upper sequence: GRMZM2G119791_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA16G05340.1 (Glycine max), 3'ss of exon 3
------------------------gtcagtattcctcccatttttatggtcaatggatgctattcctcatccagaatcatgatttaaatattcatctgagatgatattct-tgagctttt--ttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAGGTTAGTACATTCTTCTAGACTA
                          | |  |||    || | ||||  |  ||  |   |        | || | |  ||||||   | ||  | ||   |  | |||  || |    |  |||||||| ||||| ||||| ||||  ||||| ||| | || ||||| |||||| | ||||| || ||||||||||||||||||                      
gtatgtctctttctgccttgtgaatcctgagttctgagcactcttat--ttgattcaatttccattaattgcaaattgctgatttt--tttttttttggtttatttttcaatgtgtcaatgattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAG----------------------

upper sequence: GRMZM2G119791_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA19G27570.2 (Glycine max), 3'ss of exon 3
------gtcagtattcctccc--attttta-tggtc----aatggatgctattcctcatccagaatcatgatttaaatattcatctgagatgatattcttgagcttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAGGTTAGTACATTCTTCTAGACTA
       ||  | | ||| |   ||  | | | |||    | | ||| | ||| | |||  | || ||     | | | ||  | |    |   ||  |||    |  |||||||| ||||| ||||| ||||  ||||| ||| | || ||||| |||||| | ||||| || ||||||||||||||||||                      
gtatgtctctttctgccttctgaatcctgagtagtcttgaatttgattcaatttc-cattaataaccaattgctgattttttgtttacttttcaatgtttgga--taattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAG----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71436803|gb|DR817853.1|DR817853
EST:     ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGG                         TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
EST: gi|211356321|gb|FL081349.1|FL081349
EST:     ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGG                         TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
EST: gi|211356320|gb|FL081348.1|FL081348
EST:     ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGG                         TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
EST: gi|78082688|gb|DV511091.1|DV511091
EST:     ATCACTGCAAGCTGGTCCTTAACTTTCCTGAAGGGACCAACAGCACCTGG                         TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagaatcatgatttaaatattcatctgagatgatattcttgagcttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAGGTTAGTACATTCTTCTAGACTA
                                            cttttttgc  CT-rich tract
     atcatgatttaaatat  TA-rich tract