Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtattcctcccatttttatggtcaatggatgctattcctcatccagaatcatgatttaaatattcatctgagatgatattcttgagcttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAG

Basic information

species Zea mays
transcript GRMZM2G119791_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119791_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os11g36420.1 (Oryza sativa), 3'ss of exon 3
gtcagtattcctc-ccatttttatggtcaatggatgctattcctcatccagaatcatgatttaaatattcatctgagatgatattcttgagcttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAG
|| ||||||||    ||| || |    || |   | || ||         |  || |     |||  | ||    ||||   | |  |      || ||||||| ||  ||||||||||   ||||||||| ||||||||||| |||||||||||||||||||||||  |||||||||||
gtaagtattccctgtcatgttcacatgcagttacttctgttaacggatttgtgtccttcaacaaaggtccactcaagatatcacttctcttgacttatgcagTACAACACTCAGTTCAAATATTTTGAACCACTAGAATACAACTATGATGTCTGTGAAACTATCCTTCTGTGGGAACAG

upper sequence: GRMZM2G119791_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA16G05340.1 (Glycine max), 3'ss of exon 3
------------------------gtcagtattcctcccatttttatggtcaatggatgctattcctcatccagaatcatgatttaaatattcatctgagatgatattct-tgagctttt--ttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAG
                          | |  |||    || | ||||  |  ||  |   |        | || | |  ||||||   | ||  | ||   |  | |||  || |    |  |||||||| ||||| ||||| ||||  ||||| ||| | || ||||| |||||| | ||||| || ||||||||||||||||||
gtatgtctctttctgccttgtgaatcctgagttctgagcactcttat--ttgattcaatttccattaattgcaaattgctgattt--ttttttttttggtttatttttcaatgtgtcaatgattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAG

upper sequence: GRMZM2G119791_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA19G27570.2 (Glycine max), 3'ss of exon 3
------gtcagtattcctccc--attttta-tggtc----aatggatgctattcctcatccagaatcatgatttaaatattcatctgagatgatattcttgagcttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAG
       ||  | | ||| |   ||  | | | |||    | | ||| | ||| | |||  | || ||     | | | ||  | |    |   ||  |||    |  |||||||| ||||| ||||| ||||  ||||| ||| | || ||||| |||||| | ||||| || ||||||||||||||||||
gtatgtctctttctgccttctgaatcctgagtagtcttgaatttgattcaatttc-cattaataaccaattgctgattttttgtttacttttcaatgtttgga--taattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148936990|gb|EC881159.2|EC881159
EST:     ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGG                         TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
EST: gi|78092057|gb|DV520431.1|DV520431
EST:     ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGG                         TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
EST: gi|211356321|gb|FL081349.1|FL081349
EST:     ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGG                         TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
EST: gi|149080539|gb|EE169577.2|EE169577
EST:     ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGG                         TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
EST: gi|76288008|gb|DV027576.1|DV027576
EST:     ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGG                         TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
EST: gi|211356320|gb|FL081348.1|FL081348
EST:     ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGG                         TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
EST: gi|149082841|gb|EE172066.2|EE172066
EST:     ATCACTGCCAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGG                         TATAATGCTCAGCTCAAGATTTTTGAACCTCTACAATACAAATATGATGTC
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
EST: gi|78082688|gb|DV511091.1|DV511091
EST:     ATCACTGCAAGCTGGTCCTTAACTTTCCTGAAGGGACCAACAGCACCTGG                         TATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC
genomic: ATCACTGCAAGCTGGTCCTTAAATTTCCTGAAGGGACCAACAGCACCTGGgtcagtattc ... ttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagaatcatgatttaaatattcatctgagatgatattcttgagcttttttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAG
                                            cttttttgc  CT-rich tract
     atcatgatttaaatat  TA-rich tract