1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttctatctgcaggtttttggccaattttccctttctaaacactttttgtttcttttctctatagttacttaatgttatgacttatgtatgcccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGATTCCAAATGATAAGTTATTAGATGTTGCGGATGAAAACATGCCCTTGC
species | Zea mays |
transcript | GRMZM2G119773_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|149107184|gb|EE189070.2|EE189070
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|20508091|gb|BQ279894.1|BQ279894
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|211173948|gb|FL234238.1|FL234238
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|148940468|gb|EC885267.2|EC885267
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|211174836|gb|FL413961.1|FL413961
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|31998233|gb|CD661991.1|CD661991
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAEST: gi|76923027|gb|DV169298.1|DV169298
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAA
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|148941071|gb|EC885931.2|EC885931
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|149097959|gb|EE183902.2|EE183902
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|149097351|gb|EE183189.2|EE183189
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|88755311|gb|DY539452.1|DY539452
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|74235120|gb|DT643034.1|DT643034
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|211175625|gb|FL234251.1|FL234251
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|60356845|gb|DN223818.1|DN223818
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|78078489|gb|DV506902.1|DV506902
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|149013929|gb|EE043427.2|EE043427
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|20507237|gb|BQ279544.1|BQ279544
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAEST: gi|71450106|gb|DR831156.1|DR831156
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGA
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|148964386|gb|EC905762.2|EC905762
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|71305508|gb|DR788897.1|DR788897
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|148942194|gb|EC887199.2|EC887199
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|211478791|gb|FL377823.1|FL377823
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|71431993|gb|DR813043.1|DR813043
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGEST: gi|148971012|gb|EE021841.2|EE021841
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
EST: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAG GCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
genomic: GTGTTGTCACCTATCCATTCAGTTTCGAGGGCCGTAAGCGCTCTGTACAGgcaagtatct ... cccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTG
ttgtttcttttctctatagttacttaatgttatgacttatgtatgcccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGATTCCAAATGATAAGTTATTAGATGTTGCGGATGAAAACATGCCCTTGC
acttaat putative branch site (score: 135)
cccatttt putative PPT
tatagttacttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctatctgcaggtttttggccaattttccctttctaaacactttttgtttcttttctctatagttacttaatgttatgacttatgtatgcccattttagGCATTGGAAGCACTAGAGAAGCTGGAAAAGAGTGTAGACACACTTATTGTGATTCCAAATGATAAGTTATTAGATGTTGCGGATGAAAACATGCCCTTGC
- - -tctgcag
- - - - - - gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtatg