Sequence
atgc intronic sequence ATGC exonic sequencegtaaattgacacacttgcctctcttgtttttgtgtctcatatacttgctttagagaagggggaaaacactactctaatgtggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGCATCACAACCCAGACATTGTTGAACCATGCTTGGGCATCTGCAAACAATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G119725_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g19510.1 (Oryza sativa), 3'ss of exon 3
gtaaattgacacacttgcctctcttgtttttgtgtctcatatacttgctttagagaaggggga---aaacactactctaatgtggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGCATCACAACCCAGACATTGTTGAACCATGCTTGGGCATCTGCAAACAATC
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gtgaagtagatcgtttgcttctcttgttttttctcatcatgtattttgtttaggaaaataatctttactttctacattactgcatttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGCATCACAACCCAGACATTGTTAAATCATGCGTGGGCATCTGCAAATCGTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211138740|gb|FL068273.1|FL068273EST: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAG CTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
genomic: TGCTGGGTTACCTGTTTGGGATCTCCTTCCCTACAGTCAACATAACCAAGgtaaattgac ... tggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctcatatacttgctttagagaagggggaaaacactactctaatgtggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGCATCACAACCCAGACATTGTTGAACCATGCTTGGGCATCTGCAAACAATC
ctctaat putative branch site (score: 3)
tatactt TA-rich tract