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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatccggcggtctcgaatcgaacgctgcaggccttgtcagcaggcacactcattcaacggtgtacggcgtgtaaggccatggactcacgggtcgcacgtggtgcgctgctgaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACGCGCTAGGGGCGGTGGCGGCGGCGGCGGCGCCGCGTCCATGGCGTCCAGC

Basic information

species Zea mays
transcript GRMZM2G119265_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119265_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g65590.1 (Oryza sativa), 3'ss of exon 3
gtaagcatccggcggtctcgaatcgaacgctgcaggccttgtcagcagg-cacactcattca--acg-gtgtacggcgtgtaaggccatggactcacgggtcgcacgtggtgcgctgctgaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACGCGCTAGGGGCGGTGGCGGCGGCGGCGGCGCCGCGTCCATGGCGTCCAGC
                               | | || || ||    |  || |   | |||  |||   |||   | ||  || |||  |     ||    |  || | |   |       | | |||||| |||||||||||||||||  | |||||||||||| | |||||||| |||||| || || | | || || ||||| || | || || |  | |||   
-------------------------------gtaagcattttccttcgatcaaagcgaatcataacgtacgtatctcatgcgagcccaatggtgatcgaactgtgcgagct---ccctccggcctatagGTCCCTGGACAAGGCGGTGTCTTCTCTGGAGATGGAGCTCGCCGTGGAGCGCGCTCGGAGCAGCGCCGCCGTCGGCGCCGGCACGGCCGTCTCATCCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211223642|gb|FL051772.1|FL051772
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGGTGTCCACCCTGGAGATTGAGATGGCCGTGGAAC
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGG-TGTCCACCCTGGAGATGGAGATGGCCGTGGAAC
EST: gi|211225710|gb|FL051790.1|FL051790
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGAT
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGAT
EST: gi|211223637|gb|FL051767.1|FL051767
EST:     SASCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211225709|gb|FL051789.1|FL051789
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211221584|gb|FL051760.1|FL051760
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211225698|gb|FL051778.1|FL051778
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAA
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCT-GGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAA
EST: gi|211227757|gb|FL051793.1|FL051793
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211225704|gb|FL051784.1|FL051784
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTG
EST: gi|211225703|gb|FL051783.1|FL051783
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCSGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211225708|gb|FL051788.1|FL051788
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAA
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAA
EST: gi|149112056|gb|EE191226.2|EE191226
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211221585|gb|FL051761.1|FL051761
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211223632|gb|FL051762.1|FL051762
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCTCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAA
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAA
EST: gi|211223639|gb|FL051769.1|FL051769
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211225700|gb|FL051780.1|FL051780
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211223644|gb|FL051774.1|FL051774
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211221583|gb|FL051759.1|FL051759
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211227756|gb|FL051792.1|FL051792
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211225699|gb|FL051779.1|FL051779
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211225707|gb|FL051787.1|FL051787
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAA
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAA
EST: gi|211225711|gb|FL051791.1|FL051791
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACC-TGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211221582|gb|FL051758.1|FL051758
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211223645|gb|FL051775.1|FL051775
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
EST: gi|211223638|gb|FL051768.1|FL051768
EST:     CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCA                         GTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG
genomic: CACCCCAAGGATCTCCTGAACGAGGTGTCGAGAACTCATCAAGCAATCCAgtaagcatcc ... gaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcgtgtaaggccatggactcacgggtcgcacgtggtgcgctgctgaacttgtagGTCGCTGGACAAGGCGGTGTCCACCCTGGAGATGGAGATGGCCGTGGAACGCGCTAGGGGCGGTGGCGGCGGCGGCGGCGCCGCGTCCATGGCGTCCAGC
                gactcac  putative branch site (score: 2)