1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttacaattatactgtccctgtcagacctatctttgcttctgtaatgttatgctaattatgtgagtttctctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACCAGGCTCAGAAGCAGCGGCGCAGGACCTACCGCGCTCATGGGCGCATCA
species | Zea mays |
transcript | GRMZM2G119169_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCEST: gi|37390893|gb|CF632684.1|CF632684
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|5847620|gb|AW000699.1|AW000699
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|211378377|gb|FL000672.1|FL000672
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|9952004|gb|BE638587.1|BE638587
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: GATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|60345876|gb|DN212849.1|DN212849
genomic: GATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|211381028|gb|FL000688.1|FL000688
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTEST: gi|30704734|gb|CD058588.1|CD058588
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGT
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|33097211|gb|CF057171.1|CF057171
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|50335900|gb|CO531026.1|CO531026
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|101386822|gb|EB815428.1|EB815428
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTCTCACACATTCAAGTGAACEST: gi|30704742|gb|CD058589.1|CD058589
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|211381023|gb|FL000683.1|FL000683
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|5525695|gb|AI861588.1|AI861588
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: AGAGCAATGCTGAG GTAAAAGGTTTTGATGTCGATACCCTCTATGTGTCCCCCATTCAAGTG-ACEST: gi|60349795|gb|DN216768.1|DN216768
genomic: AGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|213173920|gb|FM195799.1|FM195799
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|60356912|gb|DN223885.1|DN223885
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|29167874|gb|CB411134.1|CB411134
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAEST: gi|32945522|gb|CF050341.1|CF050341
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCA
EST: TGCTAGATTCATTCTAGACCTTCTCATGA-TCGCTGGGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAATEST: gi|32934714|gb|CF039526.1|CF039526
genomic: TGCTAGATTCATTCTAGACCTTCTCAAGAAT-GCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|29544312|gb|CB604692.1|CB604692
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|211140525|gb|FL058263.1|FL058263
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|67011073|gb|CO439822.1|CO439822
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACEST: gi|211372347|gb|FL430779.1|FL430779
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
EST: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAG GTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
genomic: CTGCTAGATTCATTCTAGACCTTCTCAAGAATGCTGAGAGCAATGCTGAGgtttacaatt ... tctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAAC
gacctatctttgcttctgtaatgttatgctaattatgtgagtttctctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACCAGGCTCAGAAGCAGCGGCGCAGGACCTACCGCGCTCATGGGCGCATCA
tgctaat putative branch site (score: 60)
tttctctgct putative PPT
taatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttacaattatactgtccctgtcagacctatctttgcttctgtaatgttatgctaattatgtgagtttctctgctgcagGTAAAAGGTCTTGATGTCGATACCCTCTATGTGTCACACATTCAAGTGAACCAGGCTCAGAAGCAGCGGCGCAGGACCTACCGCGCTCATGGGCGCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC