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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttttctacggagggtatccatatccatttgtgcatctgctggctttctgattcgcgtgtggttctctttatttcgatgcagCAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG

Basic information

species Zea mays
transcript GRMZM2G119169_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30704742|gb|CD058589.1|CD058589
EST:     GGTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT                         CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GGTGAAATATTCGACGGAGCCAACCAACCCCACCAAGTgtaagttttt ... ttcgatgcagCAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
EST: gi|29167874|gb|CB411134.1|CB411134
EST:     GACGGAGCCAACCAACCCCACCAAGT                         CAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
genomic: GACGGAGCCAACCAACCCCACCAAGTgtaagttttt ... ttcgatgcagCAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtgcatctgctggctttctgattcgcgtgtggttctctttatttcgatgcagCAACCAAGGCCATGGGCCGTGACCTACGTGTTCACTTCAAG
                  ttctgat  putative branch site (score: 3)
                                   ttctctttatttc  putative PPT
                                      tctttattt  TA-rich tract