1 5' 3' | 2 5' 3' | 3 5' 3' |
...acatgttgtatctattcattgttcttagtccaaggaacccaaacagtacgagctagtatttccaaacatcgttttcatactcctgcacatctttctgcagTACTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCACAAATCGCAAGAAGGGCAATTGACCTAGCAGAAAGGAGGCTGTTGAAGGATGG
species | Zea mays |
transcript | GRMZM2G118737_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATCCAAAAAATACTAGATGGAGTTATCATAATGGAGGATCGTGGCCAG TACTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCACAAAEST: gi|60346377|gb|DN213350.1|DN213350
genomic: TGATCCAAAAAACACTAGATGGAGTTATCATAATGGAGGATCGTGGCCAGgttagtgagc ... ctttctgcagTACTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCACAAA
EST: TGATCCAAAAAACACTAGATGGAGTTATCATAATGGAGGATCGTGGCCAG TACTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCACAAAEST: gi|6022631|gb|AW067443.1|AW067443
genomic: TGATCCAAAAAACACTAGATGGAGTTATCATAATGGAGGATCGTGGCCAGgttagtgagc ... ctttctgcagTACTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCACAAA
EST: TGATCCAAAAAACACTAGATGGAGTTATCATAATGGAGGATCGTGGCCAG TACTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCACAAAEST: gi|60357852|gb|DN224825.1|DN224825
genomic: TGATCCAAAAAACACTAGATGGAGTTATCATAATGGAGGATCGTGGCCAGgttagtgagc ... ctttctgcagTACTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCACAAA
EST: TGATCCAAAAAATACTAGATGGAGTTATCATAATGGAGGATCGTGGCCAG TACTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCACAAAEST: gi|32859697|gb|CD999378.1|CD999378
genomic: TGATCCAAAAAACACTAGATGGAGTTATCATAATGGAGGATCGTGGCCAGgttagtgagc ... ctttctgcagTACTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCACAAA
EST: TGATCCAAAAAATACTAGATGGAGTTATCATAATGGAGGATCGTGGCCAG TACTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCACAAA
genomic: TGATCCAAAAAACACTAGATGGAGTTATCATAATGGAGGATCGTGGCCAGgttagtgagc ... ctttctgcagTACTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCACAAA
gtacgagctagtatttccaaacatcgttttcatactcctgcacatctttctgcagTACTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCACAAATCGCAAGAAGGGCAATTGACCTAGCAGAAAGGAGGCTGTTGAAGGATGG
catctttct CT-rich tract
tagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgttgtatctattcattgttcttagtccaaggaacccaaacagtacgagctagtatttccaaacatcgttttcatactcctgcacatctttctgcagTACTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCACAAATCGCAAGAAGGGCAATTGACCTAGCAGAAAGGAGGCTGTTGAAGGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -tgttgta
- - - - - - - - - - - - - - - - - - - ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctgc