Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgtacttccaccaacatactaacttaaattgtgcatttcagttattgttaactcatccaattgcaccctattatgccagGCCCAAAGTTATTTATGCATTCTAGAACTGATGCAGCAAATGGAGCTCTACCATCAGGTTATGTGGGCGCACCAATAAGACCAAATGGCATTCCATTCTC

Basic information

species Zea mays
transcript GRMZM2G118344_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118344_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g07070.8 (Oryza sativa), 3'ss of exon 3
gtatatgtact---tccaccaacatactaa-----cttaaattgtgcatt---tcagttattgttaactca-tccaattgcaccctattatgccagGCCCAAAGTTATTTATGCATTCTAGAACTGATGCAGCAAATGGAGCTCTACCATCAGGTTATGTGGGCGCACCAATAAGACCAAATGGCATTCCATTCTC
||| ||| |||      |   || | ||||     | |||      ||||   |||  ||| || || | | | || | |  || |||||||||||||| |||||||||||||||| |||| | |||| |||| || ||||||  | | || || ||||||||     |||| ||| | ||||   |||| |  ||
gtacatggactaaactgaattacttcctaagtgttcataatcctctcattatctcaagtatggtaaatttacttcactcgtgccttattatgccagGCCAAAAGTTATTTATGCATCCTAGGAGTGATCCAGCTAACGGAGCTGGATCGTCTGGCTATGTGGGTAACACAATGAGATCGAATGATCTTCCGTCTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67011871|gb|CO440620.1|CO440620
EST:     CTCCAGGATGGATCATGTGAACAGGTTCCAGAGTGAAGCACAGCCTTTTG                         GCCCAAAGTTATTTATGCATTCTAGAACTGATGCAGCAAATGGAGCTCTAC
genomic: CTCCAGGATGGATCATGTGAACAGGTTCCAGAGTGAAGCACAGCCTTTTGgtatatgtac ... attatgccagGCCCAAAGTTATTTATGCATTCTAGAACTGATGCAGCAAATGGAGCTCTAC
EST: gi|50334694|gb|CO529820.1|CO529820
EST:     CTCCAGGATGGATCATGTGAACAGGTTCCAGAGTGAAGCACAGCCTTTTG                         GCCCAAAGTTATTTATGCATTCTATAACTGATGCAGCAAATGGAGCTCTAC
genomic: CTCCAGGATGGATCATGTGAACAGGTTCCAGAGTGAAGCACAGCCTTTTGgtatatgtac ... attatgccagGCCCAAAGTTATTTATGCATTCTAGAACTGATGCAGCAAATGGAGCTCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaattgtgcatttcagttattgttaactcatccaattgcaccctattatgccagGCCCAAAGTTATTTATGCATTCTAGAACTGATGCAGCAAATGGAGCTCTACCATCAGGTTATGTGGGCGCACCAATAAGACCAAATGGCATTCCATTCTC
                     tgttaac  putative branch site (score: 2)
                                         ccctatt  putative PPT
                 ttattgttaa  TA-rich tract