1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaagtgtgctgtttcggatatttgtgtggattcagtctgctgtttgtcaccttacatatcctttttcgaacctctgacagaagtattttgtcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGATGAGCCGTTTATATGTACCATGGACTGCATTGGTGCCAA
species | Zea mays |
transcript | GRMZM2G117544_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCCCGAAGCCTT-GCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211034558|gb|FL157504.1|FL157504
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211034566|gb|FL157512.1|FL157512
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|89247888|gb|DY619674.1|DY619674
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211039454|gb|FL157534.1|FL157534
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|60356716|gb|DN223689.1|DN223689
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|71429028|gb|DR810078.1|DR810078
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|148995894|gb|EE035134.2|EE035134
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211032115|gb|FL157499.1|FL157499
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211034554|gb|FL157500.1|FL157500
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211037006|gb|FL157519.1|FL157519
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|76288304|gb|DV027872.1|DV027872
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|76288303|gb|DV027871.1|DV027871
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|37379861|gb|CF626698.1|CF626698
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|89758446|gb|DY687621.1|DY687621
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|71429029|gb|DR810079.1|DR810079
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211034565|gb|FL157511.1|FL157511
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCKTAGGAGACAACGEST: gi|60395143|gb|DN228012.1|DN228012
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCC-TAGGAGACAACG
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|88754192|gb|DY538333.1|DY538333
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGTTGGCCTAGGAGACAACGAEST: gi|211034561|gb|FL157507.1|FL157507
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|60398269|gb|DN231085.1|DN231085
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211037004|gb|FL157517.1|FL157517
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211037002|gb|FL157515.1|FL157515
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211037003|gb|FL157516.1|FL157516
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211034555|gb|FL157501.1|FL157501
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTYTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211034559|gb|FL157505.1|FL157505
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCEST: gi|148987000|gb|EE030820.2|EE030820
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGC
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211032114|gb|FL157498.1|FL157498
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211039452|gb|FL157532.1|FL157532
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AATCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211032113|gb|FL157497.1|FL157497
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|67012342|gb|CO441091.1|CO441091
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|89247887|gb|DY619673.1|DY619673
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211032111|gb|FL157495.1|FL157495
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAARCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATEST: gi|211034567|gb|FL157513.1|FL157513
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCAT
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211037015|gb|FL157528.1|FL157528
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTEST: gi|211034560|gb|FL157506.1|FL157506
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCT
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCEST: gi|211263410|gb|FL474910.1|FL474910
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCC
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|60337320|gb|DN204293.1|DN204293
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGAEST: gi|211034557|gb|FL157503.1|FL157503
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GGTTTGGACCATACTTCTGCCAACCAGTTATTGEST: gi|211037011|gb|FL157524.1|FL157524
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagG-TTTGGACCATACTTCTGCCAACCAGTTATTG
EST: AAGCCCGAAGCCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAG GTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
genomic: AAGCCCGAAACCTTTGCCAGCCTTGTTTCAGCCCTCCTCTATGAGAAAAGgtgacaaacc ... tcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGA
gtcaccttacatatcctttttcgaacctctgacagaagtattttgtcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGATGAGCCGTTTATATGTACCATGGACTGCATTGGTGCCAA
ctctgac putative branch site (score: 3)
ttttgtc putative PPT
aagtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagtgtgctgtttcggatatttgtgtggattcagtctgctgtttgtcaccttacatatcctttttcgaacctctgacagaagtattttgtcatatgtagGTTTGGACCATACTTCTGCCAACCAGTTATTGCTGGCCTAGGAGACAACGATGAGCCGTTTATATGTACCATGGACTGCATTGGTGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - tgctgtt
- - - - - - - - - - - - - - - - - -tctgctg