Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcggcagtcagtcatgtaattatgccttggatcttgtacattacattttttgcactctgcgccacacattccaatgtttttaaaacgatggaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAATTTGGTATTCGCCTTCTGATGATGTAGGTTAAAGTTTTGCTGACTACTG

Basic information

species Zea mays
transcript GRMZM2G117388_T04
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G117388_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g09550.3 (Oryza sativa), 3'ss of exon 1
tcggcagtcagtcatgtaattatgccttggatcttgtacattacattttttgcactc-tgcgccacacattccaatgtttttaaaacga-tggaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAATTTGGTATTCGCCTTCTGATGATGTAGGTTAAAGTTTTGCTGACTACTG
   |||||  ||| | |  |||||  | | |  | | || |   |||| |||||||| |||        || |||| |            ||| |||| ||||||||||||||||| ||||| |||||||||||||     ||||| || || ||||| |||||||||||||||||                          
-ttgcagtttgtcctatgcttatgt-tggcaattggcacctgtaatttgttgcactcctgctattttactttcaatataagagctgtttctgggccttacagATATGGAGGCTATTTACAAGCTTCTTTTTCCTGGGCAAGTTTTCTATCAACTTTGGGATTCGCCTTCTGATGAT--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211028982|gb|FL127261.1|FL127261
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|211262949|gb|FL116380.1|FL116380
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCAT
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCAT
EST: gi|32919438|gb|CF024250.1|CF024250
EST:     ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: ACCCATTATTTCTTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
EST: gi|32788829|gb|CD941065.1|CD941065
EST:     CCCATTATTTCTCTTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAG                         ATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA
genomic: CCCATTATTTCT-TTACTTAGATTACCCCTTGGTGTTCAAGAAGTTTGAGgttagcttct ... gaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttgcactctgcgccacacattccaatgtttttaaaacgatggaccttgcagATATGGAGGCTATTGACAAGTTTCTTTTTCCTGGCACCATTTTCCATGAAATTTGGTATTCGCCTTCTGATGATGTAGGTTAAAGTTTTGCTGACTACTG
                           aatgtttttaaaa  TA-rich tract