1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caagattcataaatcatagtgccaatgagttgtcctggtattatgtccatgttatttcattttagatgaattcatacttcactcttgccctttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACAATGTATTTTGATGAACTTCTTCCAAGATTGGTGAAAGAAGGAAGTGATG
species | Zea mays |
transcript | GRMZM2G116087_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACAEST: gi|71762890|gb|DR960827.1|DR960827
genomic: GCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACAEST: gi|60356414|gb|DN223387.1|DN223387
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: GAGCCCCAGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACAEST: gi|148957418|gb|EC903477.2|EC903477
genomic: GAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACAEST: gi|211304785|gb|FL143334.1|FL143334
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
EST: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGG GTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
genomic: TTTCCAAGGATCTGCCTGAGCCCCAGTTGCCACCTATGCAATACCCAAGGgtaatgcatg ... tttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACA
tccatgttatttcattttagatgaattcatacttcactcttgccctttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACAATGTATTTTGATGAACTTCTTCCAAGATTGGTGAAAGAAGGAAGTGATG
cttcactcttgccctt CT-rich tract
ttatttcattttagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagattcataaatcatagtgccaatgagttgtcctggtattatgtccatgttatttcattttagatgaattcatacttcactcttgccctttgtcatagGTTTTGCATCCCATTGCTGATTCTATCAATATCAACAAAGAGATTTGGACAATGTATTTTGATGAACTTCTTCCAAGATTGGTGAAAGAAGGAAGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - tgtcctg
- - - - - - - - - - - - - - - - - - - - - - gtccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tttcatt