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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccatttcctttttctctctcttgttttacccatccaatttatatctcgtgtgagcacaccttgtctcactttagtaataactgtttgttggagttgcagAGTACCTTGCCCCAGAGAGGTGGTGAAGTGAATGTTACTCTAGGAGGGATTGATTTGAACAATTCTGGGAG

Basic information

species Zea mays
transcript GRMZM2G115975_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115975_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g24180.1 (Oryza sativa), 3'ss of exon 3
-tccatttcctttttctctctcttgttttacccatccaatttatatctcgtgtgagcaca-ccttgtctcactttagtaataactgtttgttggagttgcagAGTACCTTGCCCCAGAGAGGTGGTGAAGTGAATGTTACTCTAGGAGGGATTGATTTGAACAATTCTGGGAG
 ||| ||  || | |||| | |       ||   | || || ||| || |||| |  ||| || | ||  | ||    |  |||  |||||||   ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||
gtcctttctctctctctcccacccaccc-actagtgcagtt-ataacttgtgtaacaacaaccatttcctaattcttgataaaccttttgttgacattgtagAGTACCTTGCCCCAGAGAGGTGGTGAAGTGAATGTTACTCTGGGAGGAATTGACTTGAATAATTCTGGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211179361|gb|FL014689.1|FL014689
EST:     GTTGGTTCATCCTCACAAGAACATCATTGGTTTTCTTCAAGAGTGATCCT                         AGTACCTTGCCCCAGAGAGGTGGTGAAGTGAATGTTACTCTAGGAGGGATT
genomic: GTTGGTTCATCCTCACAAGAACATCATTGGTTTTCTTCAAGAGTGATCCTgttagtacct ... ggagttgcagAGTACCTTGCCCCAGAGAGGTGGTGAAGTGAATGTTACTCTAGGAGGGATT
EST: gi|50327514|gb|CO522640.1|CO522640
EST:     GTTGGTTCATCCTCACAAGAACATCATTGGTTTTCTTCAAGAGTGATCCT                         AGTACCTTGCCCCAGAGAGGTGGTGAAGTGAATGTTACTCTAGGAGGGATT
genomic: GTTGGTTCATCCTCACAAGAACATCATTGGTTTTCTTCAAGAGTGATCCTgttagtacct ... ggagttgcagAGTACCTTGCCCCAGAGAGGTGGTGAAGTGAATGTTACTCTAGGAGGGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgtgtgagcacaccttgtctcactttagtaataactgtttgttggagttgcagAGTACCTTGCCCCAGAGAGGTGGTGAAGTGAATGTTACTCTAGGAGGGATTGATTTGAACAATTCTGGGAG
                              taataac  putative branch site (score: 1)
                         tttagtaataa  TA-rich tract