Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttttgaatatagtatattcatctctagtagcttagtagaagtatctcttgttaatgcttaccaaggatgtaaacttgaactattgaagAGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTTGAGCGTAGTGGCCTTCTGTCATCTTCAGGGAGTAGTGCATCGTGATTTG

Basic information

species Zea mays
transcript GRMZM2G115518_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115518_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g50030.1 (Oryza sativa), 3'ss of exon 3
gtactttttgaatatagtatattcatctctagtagcttagtagaagtatctct-------tgttaatgcttaccaaggatgtaaacttgaactattgaagAGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTTGAGCGTAGTGGCCTTCTGTCATCTTCAGGGAGTAGTGCATCGTGATTTG
||||||| |  || |    | || ||   ||||||   | ||  | |||||||       ||||||| ||||||||  |||  ||| |||||||||||||||| |||||||| ||||| |||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
gtactttctacatttt---tctttatgcatagtagtaaactaatactatctctgtatatttgttaatccttaccaattatgctaacctgaactattgaagAGGCGGGAGATACACAGAGGAAGATGCCAAAGCGATTGTTGTACAGATTTTGAGCGTAGTAGCCTTCTGTCATCTTCAGGGGGTAGTGCATCGTGATTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354119|gb|CD438476.1|CD438476
EST:     ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAG                         AGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTT
genomic: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAGgtactttttg ... actattgaagAGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTT
EST: gi|32830719|gb|CD970397.1|CD970397
EST:     ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAG                         AGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGT
genomic: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAGgtactttttg ... actattgaagAGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGT
EST: gi|31356504|gb|CD440861.1|CD440861
EST:     ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAG                         AGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTT
genomic: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAGgtactttttg ... actattgaagAGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTT
EST: gi|211371493|gb|FL287192.1|FL287192
EST:     ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAG                         AGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTT
genomic: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAGgtactttttg ... actattgaagAGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTT
EST: gi|6760508|gb|AW324597.1|AW324597
EST:     ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAG                         AGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTT
genomic: ATTATGTGAAGGTGGAGAGTTGCTAGACAGAATTTTAGCAAGgtactttttg ... actattgaagAGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtagaagtatctcttgttaatgcttaccaaggatgtaaacttgaactattgaagAGGTGGGAGATATACAGAAGAAGATGCCAAAGCGATCATTGTACAGATTTTGAGCGTAGTGGCCTTCTGTCATCTTCAGGGAGTAGTGCATCGTGATTTG
                     tgcttac  putative branch site (score: 2)
              ttgttaat  TA-rich tract