1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagctttcgcacccgcttcttctcacttgtcaatagactcagtacctcgctgcgcttgttcagtaagaaacctatgtactatgcagGACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTTCTTGTCGAAGAAGCTGAAGATAAGCAGCGTGGTGGTGTATGGATTGATG
species | Zea mays |
transcript | GRMZM2G115372_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCAT GACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTTEST: gi|211496790|gb|FL062553.1|FL062553
genomic: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCATgtaagctttc ... tactatgcagGACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTT
EST: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCAT GACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTTEST: gi|211493907|gb|FL062545.1|FL062545
genomic: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCATgtaagctttc ... tactatgcagGACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTT
EST: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCAT GACAAGCTCCACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTTEST: gi|78076777|gb|DV505211.1|DV505211
genomic: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCATgtaagctttc ... tactatgcagGACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTT
EST: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCAT GACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTTEST: gi|211493908|gb|FL062546.1|FL062546
genomic: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCATgtaagctttc ... tactatgcagGACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTT
EST: ACCTACTTAGTAGGCTTCAACGATACGAGATGGAAATGGAGGATTATCAT GACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTTEST: gi|211493909|gb|FL062547.1|FL062547
genomic: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCATgtaagctttc ... tactatgcagGACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTT
EST: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCAT GACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTTEST: gi|149088178|gb|EE177307.2|EE177307
genomic: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCATgtaagctttc ... tactatgcagGACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTT
EST: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCAT GACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTTEST: gi|211496794|gb|FL062557.1|FL062557
genomic: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCATgtaagctttc ... tactatgcagGACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTT
EST: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCAT GACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTTEST: gi|211496789|gb|FL062552.1|FL062552
genomic: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCATgtaagctttc ... tactatgcagGACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTT
EST: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCAT GACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTT
genomic: ACCTACTTAGTAGGCTTCAACGGTACGAGATGGAAATGGAGGATTATCATgtaagctttc ... tactatgcagGACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTT
aatagactcagtacctcgctgcgcttgttcagtaagaaacctatgtactatgcagGACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTTCTTGTCGAAGAAGCTGAAGATAAGCAGCGTGGTGGTGTATGGATTGATG
taagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctttcgcacccgcttcttctcacttgtcaatagactcagtacctcgctgcgcttgttcagtaagaaacctatgtactatgcagGACAAGCTGTACTTCTGGGAGAATAGCAGGGAGAAAGAGCGGCGCAGGCTTCTTGTCGAAGAAGCTGAAGATAAGCAGCGTGGTGGTGTATGGATTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG