1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtatttccatgtaaactaccattgtttcttttgttgtccactgagcaaatcattttgtgtgatgagtttctttaaagattccactttattttccccccagAAACATCAGCACTGGAACTCCAGAAGTAATGGTCAATTTTGTGACGTCATGTTATAAGCCAGATGTATTGATGCCTCTTGTTGATAAAATCACAAAAATA
species | Zea mays |
transcript | GRMZM2G115198_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATAAGAACTGGAAG AAACATCAGCACTGGAACTCCAGAAGTAATGGTCAATTTTGTGACGTCATG
genomic: ATAAGAACTGGAAGgtatggtatt ... ttccccccagAAACATCAGCACTGGAACTCCAGAAGTAATGGTCAATTTTGTGACGTCATG
caaatcattttgtgtgatgagtttctttaaagattccactttattttccccccagAAACATCAGCACTGGAACTCCAGAAGTAATGGTCAATTTTGTGACGTCATGTTATAAGCCAGATGTATTGATGCCTCTTGTTGATAAAATCACAAAAATA
ttccactttattttcc CT-rich tract
tttctttaaagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttccatgtaaactaccattgtttcttttgttgtccactgagcaaatcattttgtgtgatgagtttctttaaagattccactttattttccccccagAAACATCAGCACTGGAACTCCAGAAGTAATGGTCAATTTTGTGACGTCATGTTATAAGCCAGATGTATTGATGCCTCTTGTTGATAAAATCACAAAAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - -catgtaa
- - - - - - - - - - - tgtttct
- - - - - - - - - - - - - - -tttgttg
- - - - - - - - - - - - - - - - - - -ccactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgatg