1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaggtgcattgttttatatataatcattaaatcatatcatacttattccacactgtgtaagctcttctgtttgtttgttgtatagGACTTTGGTCAGTGTGATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAG
species | Zea mays |
transcript | GRMZM2G114758_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGG GACTTTGGTCAGTGTGATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGAEST: gi|4753352|gb|AI657257.1|AI657257
genomic: AAGGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGGgtaggtgcat ... tgttgtatagGACTTTGGTCAGTGTGATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGA
EST: AAGGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGG GACTTTGGTCAGTGTGATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGAEST: gi|20301530|gb|BQ164473.1|BQ164473
genomic: AAGGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGGgtaggtgcat ... tgttgtatagGACTTTGGTCAGTGTGATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGA
EST: AAGGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGG GACTTTGGTCAGTGTGATGTTAAAAGATGCACTGGTCGTAAACTTTCAAGAEST: gi|71304851|gb|DR788540.1|DR788540
genomic: AAGGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGGgtaggtgcat ... tgttgtatagGACTTTGGTCAGTGTGATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGA
EST: AAGGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGG GACTTTGGTCAGTGTGATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGAEST: gi|91048770|gb|EB159188.1|EB159188
genomic: AAGGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGGgtaggtgcat ... tgttgtatagGACTTTGGTCAGTGTGATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGA
EST: AAGGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGG GACTTTGGTCAGTGTGATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGAEST: gi|26456351|gb|CA827934.1|CA827934
genomic: AAGGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGGgtaggtgcat ... tgttgtatagGACTTTGGTCAGTGTGATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGA
EST: AAGGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGG GACTTTGGTCAGTGTGATGTTAAAAGATGCACTGGTCGTAAACTTTCAAGA
genomic: AAGGCACAGAAGACGAACTCAAAGGTTCAAGAATTCAGCTTGCAATGTGGgtaggtgcat ... tgttgtatagGACTTTGGTCAGTGTGATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGA
atcatatcatacttattccacactgtgtaagctcttctgtttgtttgttgtatagGACTTTGGTCAGTGTGATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAG
ctcttctgtttgttt CT-rich tract
atacttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgcattgttttatatataatcattaaatcatatcatacttattccacactgtgtaagctcttctgtttgtttgttgtatagGACTTTGGTCAGTGTGATGTCAAAAGATGCACTGGTCGTAAACTTTCAAGATTTGGGCTTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG