Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttggtgtcccgattttgcttagaggcgcatgtccttttccccatttgagttcttggttgttatcttgtttgaacactgtgttttgctgtggcagGCTGAGTTCTTGAAGAAAGCCCCAGGAGTTAAGCATGTTGAGAGAGACATGAAGGTACAGAAATTGACTACACACACACCTCAGTTTCTTGGATTGCCAA

Basic information

species Zea mays
transcript GRMZM2G114394_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G114394_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g48650.3 (Oryza sativa), 3'ss of exon 2
gtatttggtgtcccgattttgcttag-aggcgcatgtccttttccccatttgagttcttggttgttatcttgtttgaacactg---tgttttgctgtggcagGCTGAGTTCTTGAAGAAAGCCCCAGGAGTTAAGCATGTTGAGAGAGACATGAAGGTACAGAAATTGACTACACACACACCTCAGTTTCTTGGATTGCCAA
                   |  |||| |     || || |||   |  |    |||   | || ||||||||  ||||||| |   | |||  |||||  ||||||| ||| | | ||||||||||||||| |||||||| |||||||| |||||| ||||||||||||| |||||||| || || ||||||||||||||||
------------------gtatttagcatttttatatcttttcttctttcctggtttaagattattatcttggctgaacacagcaatctttcactgtgttagGCTGAATTCCTAAGGAAAGCCCCAGGAGTAAAGCATGTGGAGAGAGATATGAAGATACAGAAATTGACGACACACACTCCACAATTTCTTGGATTGCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148938599|gb|EC882927.2|EC882927
EST:     GCTACCATCATCTCATCAATGGCTTCGCAGTTCACATGTCGCCACTGCAG                         GCTGAGTTCTTGAAGAAAGCCCCAGGAGTTAAGCATGTTGAGAGAGACATG
genomic: GCTACCATCATCTCATCAATGGCTTCGCAGTTCACATGTCGCCACTGCAGgtatttggtg ... gctgtggcagGCTGAGTTCTTGAAGAAAGCCCCAGGAGTTAAGCATGTTGAGAGAGACATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccatttgagttcttggttgttatcttgtttgaacactgtgttttgctgtggcagGCTGAGTTCTTGAAGAAAGCCCCAGGAGTTAAGCATGTTGAGAGAGACATGAAGGTACAGAAATTGACTACACACACACCTCAGTTTCTTGGATTGCCAA
                                         ttttgct  CT-rich tract
                 ttgttat  TA-rich tract