1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaggggacgtttcagcaccactgttaatctattaagttcctccagcgtgctgttatttaaattgtgcgccataatcctctttacagATCTTCACCAGTTCCTCACAGCTGCATATGCAAAATATGACATCATGATATGGTCAGCAACTAGGTAAGCTTTTGGCACCCTCATCTATCAGCTAATTGT
species | Zea mays |
transcript | GRMZM2G114172_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTTGACCATAAGTCAACAGCTGAGAATCCTATGGAACTCATGCGCCCAT ATCTTCACCAGTTCCTCACAGCTGCATATGCAAAATATGACATCATGATATEST: gi|78113538|gb|DV531929.1|DV531929
genomic: GTTTGACCATAAGTCAACAGCTGAGAATCCTATGGAACTCATGCGCCCATgtaaggggac ... ctctttacagATCTTCACCAGTTCCTCACAGCTGCATATGCAAAATATGACATCATGATAT
EST: GTTTGACCATAAGTCAACAGCTGAGAATCCTATGGGACTCATGCGCCCAT ATCTTCACCAGTTCCTCACAGCTGCATATGCAAAATATGACATCATGATATEST: gi|78109953|gb|DV528368.1|DV528368
genomic: GTTTGACCATAAGTCAACAGCTGAGAATCCTATGGAACTCATGCGCCCATgtaaggggac ... ctctttacagATCTTCACCAGTTCCTCACAGCTGCATATGCAAAATATGACATCATGATAT
EST: GTTTGACCATAAGTCAACAGCTGAGAATCCTATGGAACTCATGCGCCCAT ATCTTCACCAGTTCCTCACAGCTGCATATGCAAAATATGACATCATGATAT
genomic: GTTTGACCATAAGTCAACAGCTGAGAATCCTATGGAACTCATGCGCCCATgtaaggggac ... ctctttacagATCTTCACCAGTTCCTCACAGCTGCATATGCAAAATATGACATCATGATAT
ttaagttcctccagcgtgctgttatttaaattgtgcgccataatcctctttacagATCTTCACCAGTTCCTCACAGCTGCATATGCAAAATATGACATCATGATATGGTCAGCAACTAGGTAAGCTTTTGGCACCCTCATCTATCAGCTAATTGT
tcctctttac CT-rich tract
tgttatttaaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggggacgtttcagcaccactgttaatctattaagttcctccagcgtgctgttatttaaattgtgcgccataatcctctttacagATCTTCACCAGTTCCTCACAGCTGCATATGCAAAATATGACATCATGATATGGTCAGCAACTAGGTAAGCTTTTGGCACCCTCATCTATCAGCTAATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT