1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgaaccataacctttttcttatgcgcctttagcccccctaccccctcacctgttcttttattttgtttagctcatgtcatatgttcactactaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATCAACTTCGGAGAACAG
species | Zea mays |
transcript | GRMZM2G114131_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTTGCTCCGGCGGTTCTTCGCCGAAACCCCGGAGGCGGCTGTTGGGGAG ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATCAACTTCGGAGAACAGEST: gi|60401013|gb|DN233820.1|DN233820
genomic: ATTTGCTCCGGCGGTTCTTCGCCGAAACCCCGGAGGCGGCTGTTGGGGAGgtgagttttt ... actaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATCAACTTCGGAGAACAG
EST: GGCGGCTGTTGGGGAG ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATCAACTTCGGAGAACAGEST: gi|50331796|gb|CO526922.1|CO526922
genomic: GGCGGCTGTTGGGGAGgtgagttttt ... actaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATCAACTTCGGAGAACAG
EST: ATTTGCTCCGGCGGTTCTTCGCCGAAACCCCGGAGGCGGCTGTTGGGGAG ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATCAACTTCGGAGAACAGEST: gi|148944968|gb|EC890138.2|EC890138
genomic: ATTTGCTCCGGCGGTTCTTCGCCGAAACCCCGGAGGCGGCTGTTGGGGAGgtgagttttt ... actaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATCAACTTCGGAGAACAG
EST: ATTTGCTCCGGCGGTTCTTCGCCGAAACCCCGGAGGCGGCTGTTGGGGAG ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATCAACTTCGGAGAACAGEST: gi|78118988|gb|DV537372.1|DV537372
genomic: ATTTGCTCCGGCGGTTCTTCGCCGAAACCCCGGAGGCGGCTGTTGGGGAGgtgagttttt ... actaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATCAACTTCGGAGAACAG
EST: ATTTGCTCCGGCGGTTCTTCGCCGAAACCCCGGAGGCGGCTGTTGGGGAG ATTGGTCTGGACAAAGGTTCACATGGAAAAACCATCAACTTCGGAGAACAG
genomic: ATTTGCTCCGGCGGTTCTTCGCCGAAACCCCGGAGGCGGCTGTTGGGGAGgtgagttttt ... actaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATCAACTTCGGAGAACAG
ctcacctgttcttttattttgtttagctcatgtcatatgttcactactaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATCAACTTCGGAGAACAG
tactaat putative branch site (score: 1)
ttcttttattttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaaccataacctttttcttatgcgcctttagcccccctaccccctcacctgttcttttattttgtttagctcatgtcatatgttcactactaatgcagATTGGTCTGGACAAAGGTTCACATGGAAAAACCATCAACTTCGGAGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA