1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cttcctattctttactgagccccatacagaaaataacttctcttttatctttcatgtgatgattcatgctaatgcttttacctgttcctgctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCATACATGCGTATGGTTTATGCTT
species | Zea mays |
transcript | GRMZM2G114126_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCAEST: gi|211354687|gb|FL118766.1|FL118766
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG TTGATGGAATACTGTGAGEST: gi|211354688|gb|FL118767.1|FL118767
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAG
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATC-AEST: gi|211354685|gb|FL118764.1|FL118764
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCAEST: gi|71438648|gb|DR819698.1|DR819698
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCAEST: gi|74236529|gb|DT644443.1|DT644443
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCAEST: gi|26558339|gb|CA830574.1|CA830574
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCAEST: gi|211354691|gb|FL118770.1|FL118770
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: TTCCAGTCATATTTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG TTGATGGAATACCTGTGAGTTGTTAGACEST: gi|211354686|gb|FL118765.1|FL118765
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATAC-TGTGAGTTGTTAGAC
EST: TTCCAGTCCTAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCAEST: gi|149105113|gb|EE290596.2|EE290596
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCAEST: gi|148961873|gb|EE012659.2|EE012659
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCAEST: gi|32801394|gb|CD953630.1|CD953630
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCEST: gi|71329770|gb|DR801598.1|DR801598
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATC
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCAEST: gi|87155561|gb|DY400350.1|DY400350
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAG TTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtacta ... ctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCA
tatctttcatgtgatgattcatgctaatgcttttacctgttcctgctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCATACATGCGTATGGTTTATGCTT
tgctaat putative branch site (score: 2)
ttcctgct putative PPT
tttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcctattctttactgagccccatacagaaaataacttctcttttatctttcatgtgatgattcatgctaatgcttttacctgttcctgctgaatgcagTTGATGGAATACTGTGAGTTGTTAGACAAAGCAGATGAATGTGAGGATCCATACATGCGTATGGTTTATGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - tttactg
- - - - - - - - - - -ccataca
- - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcctg