1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtgacaaacagggtgtatttataattaacaatggtgtctttctagttaacaatggcatcggctgacctgtccttttctttcagTGGGATGCTAAGCCTGGTCTAGCTACTAGATTATGAACTCTCTGCTGATCTAATAGCATTTCTACAAGAATTCTTTTGCTGGAAGGTTTATTAGTTATTT
species | Zea mays |
transcript | GRMZM2G113619_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATCTTGGAGCTG TGGGATGCTAAGCCTGGTCTAGCTACTAGATTATGAACTCTCTGCTGATCTEST: gi|8551597|gb|BE128942.1|BE128942
genomic: GATCTTGGAGCTGgtatgtgaca ... tttctttcagTGGGATGCTAAGCCTGGTCTAGCTACTAGATTATGAACTCTCTGCTGATCT
EST: GGGTCTTGATTCTTGTATGAACTCAAGATTTATGGTGGATCTTGGAGCTG TGGGATGCTAAGCCTGGTCTAGCTACTAGATTATGAACTCTCTGCTGATCT
genomic: GGGTCTTGATTCTTGTATGAACTCAAGATTTATGGTGGATCTTGGAGCTGgtatgtgaca ... tttctttcagTGGGATGCTAAGCCTGGTCTAGCTACTAGATTATGAACTCTCTGCTGATCT
caatggtgtctttctagttaacaatggcatcggctgacctgtccttttctttcagTGGGATGCTAAGCCTGGTCTAGCTACTAGATTATGAACTCTCTGCTGATCTAATAGCATTTCTACAAGAATTCTTTTGCTGGAAGGTTTATTAGTTATTT
ggctgac putative branch site (score: 3)
cctgtccttttctttc CT-rich tract
ttaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgacaaacagggtgtatttataattaacaatggtgtctttctagttaacaatggcatcggctgacctgtccttttctttcagTGGGATGCTAAGCCTGGTCTAGCTACTAGATTATGAACTCTCTGCTGATCTAATAGCATTTCTACAAGAATTCTTTTGCTGGAAGGTTTATTAGTTATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG