1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatcttactcaattttggggcatatcttagcattgttctaccctttactattttattttatcctgcacctgattattatatatatgctctatatatgcagGCAGAGAAGAAGGCTAGAATTCGCAATAATAAGCTCGAGCAAGGCGCAGCTAAGGTTGCTGAAGAGCTTCAGAAGT
species | Zea mays |
transcript | GRMZM2G113592_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCCCGAGGATCCAGAGTATGCTCCGCCAGTACCCAAGTGTGAGACCAGG GCAGAGACGAAGGCTAGAATTCGCAATAATAAGCTCGAGCAAGGCGCAGCCEST: gi|148967855|gb|EE019150.2|EE019150
genomic: AGCCCGAGGATCCAGAGTATGCTCCGCCAGTACCCAAGTGTGAGACCAGGgtatgttttt ... atatatgcagGCAGAGAAGAAGGCTAGAATTCGCAATAATAAGCTCGAGCAAGGCGCAGC-
EST: AGCCCGAGGATCCAGAGTATGCTCCGCCAGTACCCAAGTGTGAGACCAGG GCAGAGAAGAAGGCTAGAATTCGCAATAATAAGCTCGAGCAAGGCGCAGCTEST: gi|89759256|gb|DY688127.1|DY688127
genomic: AGCCCGAGGATCCAGAGTATGCTCCGCCAGTACCCAAGTGTGAGACCAGGgtatgttttt ... atatatgcagGCAGAGAAGAAGGCTAGAATTCGCAATAATAAGCTCGAGCAAGGCGCAGCT
EST: GCCCGAGGATCCAGAGTATGCTCCGCCAGTACCCCAAGTGTGAGACCAGG GCAAAGAAGAAGGGTAGAATTCEST: gi|211227314|gb|FL251475.1|FL251475
genomic: GCCCGAGGATCCAGAGTATGCTCCGCCAGTACCC-AAGTGTGAGACCAGGgtatgttttt ... atatatgcagGCAGAGAAGAAGGCTAGAATTC
EST: AGCCCGAGGATCCAGAGTATGCTCCGCCAGTACCCAAGTGTGAGACCAGG GCAGAGAAGAAGGCTAGAATTCGCAATAATAAGCTCGAGCAAGGCGCAGCTEST: gi|211227311|gb|FL251472.1|FL251472
genomic: AGCCCGAGGATCCAGAGTATGCTCCGCCAGTACCCAAGTGTGAGACCAGGgtatgttttt ... atatatgcagGCAGAGAAGAAGGCTAGAATTCGCAATAATAAGCTCGAGCAAGGCGCAGCT
EST: AGCCCGAGGATCCAGAGTATGCTCCGCCAGTACCCAAGTGTGAGACCAGG GCAGAGAAGAAGGCTAGAATTCGCAATAATAAGCTCGAGCAAGGCGCAGCTEST: gi|91051679|gb|EB162097.1|EB162097
genomic: AGCCCGAGGATCCAGAGTATGCTCCGCCAGTACCCAAGTGTGAGACCAGGgtatgttttt ... atatatgcagGCAGAGAAGAAGGCTAGAATTCGCAATAATAAGCTCGAGCAAGGCGCAGCT
EST: AGCCCGAGGATCCAGAGTATGCTCCGCCAGTACCCAAGTGTGAGACCAGG GCAGAGAAGAAGGCTAGAATTCGCAATAATAAGCTCGAGCAAGGCGCAGCT
genomic: AGCCCGAGGATCCAGAGTATGCTCCGCCAGTACCCAAGTGTGAGACCAGGgtatgttttt ... atatatgcagGCAGAGAAGAAGGCTAGAATTCGCAATAATAAGCTCGAGCAAGGCGCAGCT
tactattttattttatcctgcacctgattattatatatatgctctatatatgcagGCAGAGAAGAAGGCTAGAATTCGCAATAATAAGCTCGAGCAAGGCGCAGCTAAGGTTGCTGAAGAGCTTCAGAAGT
acctgat putative branch site (score: 4)
tgattattatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcttactcaattttggggcatatcttagcattgttctaccctttactattttattttatcctgcacctgattattatatatatgctctatatatgcagGCAGAGAAGAAGGCTAGAATTCGCAATAATAAGCTCGAGCAAGGCGCAGCTAAGGTTGCTGAAGAGCTTCAGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT