1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taatggtttgtatgataacacaaatgtgaaaagtagaatagaatgccatgtatttggaagcagagtggattggaactaattgtatatttttatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA
species | Zea mays |
transcript | GRMZM2G112865_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|37393499|gb|CF634015.1|CF634015
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTCCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|113684918|gb|DW837812.1|DW837812
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG AGATCGAGCTGGGGGCTACEST: gi|113740638|gb|DW856220.1|DW856220
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTAC
EST: GTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTAACAG AGATCGAGCTGGGGGCTACEST: gi|60353121|gb|DN220094.1|DN220094
genomic: GTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTA-CAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTAC
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|110963515|gb|EE183415.1|EE183415
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|22490485|gb|BU050408.1|BU050408
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTCCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|21987795|gb|BQ779323.1|BQ779323
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GG-GATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|32929716|gb|CF034528.1|CF034528
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|60356193|gb|DN223166.1|DN223166
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|60397912|gb|DN230728.1|DN230728
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|87151864|gb|DY396653.1|DY396653
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTCCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|18965108|gb|BM661397.1|BM661397
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTCCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|19058032|gb|BM736699.1|BM736699
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTCCGCTACAG AGATCGAGCTGGGGGCTAEST: gi|32909297|gb|CF014109.1|CF014109
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTA
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|50337603|gb|CO532729.1|CO532729
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|22545985|gb|BU098344.1|BU098344
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|166482064|gb|EG123746.1|EG123746
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTCCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGEST: gi|148963908|gb|EE015020.2|EE015020
genomic: GTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
EST: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAG AGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
genomic: GGTGATGATGTCGTTCATAAGCTATTTACTGAGCTGGCCTTTCGCTACAGgtaatctgtt ... tatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGG
ccatgtatttggaagcagagtggattggaactaattgtatatttttatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA
aactaat putative branch site (score: 2)
tattttt putative PPT
attggaactaattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatggtttgtatgataacacaaatgtgaaaagtagaatagaatgccatgtatttggaagcagagtggattggaactaattgtatatttttatattccagAGATCGAGCTGGGGGCTACACAAGAATGTTAAGAACCAGGATACGTGTTGGTGATGCTGCTCCAATGGCATACATCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT