1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttctgccctgtatgttgtcaaaaatacatatgtcatatatacttagattcacactaaataaatgcaaatgtaaataatcgttatgtttctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG
species | Zea mays |
transcript | GRMZM2G112337_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCGGCCATGGTTTGTGAAAAACTCCAGATCATCTGCATCCACTAAAGTG GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: TCCGGCCATGGTTTGTGAAAAACTCCAGATCATCTGCATCCACCAAAGTGgtcagtgttt ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
tagattcacactaaataaatgcaaatgtaaataatcgttatgtttctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG
cactaaa putative branch site (score: 8)
tgtttctcc putative PPT
taaataaatgcaaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctgccctgtatgttgtcaaaaatacatatgtcatatatacttagattcacactaaataaatgcaaatgtaaataatcgttatgtttctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTGAAACGACATGTGGGTCTTTGCTGCAGCAACTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- ttctgcc
- - - - -ctgtatg
- - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - -gattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgtt