Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtagcacttccaagttgatttgaattacagtttaacacagtatcatacttaaattgggaaattggaactcagtttcatttgttgactctttgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGACAGGGGGTACATCTTACAGCGGCTGCAACTAACAGGCATATGCATTTTCG

Basic information

species Zea mays
transcript GRMZM2G112240_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14244543|gb|BG840654.2|BG840654
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|18172006|gb|BM347394.1|BM347394
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|213170798|gb|FM182282.1|FM182282
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|32930825|gb|CF035637.1|CF035637
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|6526612|gb|AW215909.1|AW215909
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|60337978|gb|DN204951.1|DN204951
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|24767959|gb|CA403092.1|CA403092
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|9254755|gb|BE345223.1|BE345223
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|18164551|gb|BM334390.1|BM334390
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|113701331|gb|EE678835.1|EE678835
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|18168203|gb|BM338049.1|BM338049
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACTCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|32941551|gb|CF046370.1|CF046370
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|166658984|gb|EG237780.1|EG237780
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGC
EST: gi|16925853|gb|BM078921.1|BM078921
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|60352633|gb|DN219606.1|DN219606
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|78024437|gb|DV492824.1|DV492824
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|9824813|gb|BE575120.1|BE575120
EST:     CTGCAAGGAAGATGATGGGTGGTTCACCTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|28984402|gb|BQ539077.2|BQ539077
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|60358332|gb|DN225305.1|DN225305
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|28911225|gb|BM333651.2|BM333651
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|5915223|gb|AW052864.1|AW052864
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCCCCAAG                         TCATTCAGGGGATGGTGNCAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|78085667|gb|DV514060.1|DV514060
EST:     CTGCAAGGAAGATGATGGGGGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGAGGGGGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|13558333|gb|BG549689.1|BG549689
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGAATAGTGACAGCGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|18662200|gb|BM501797.1|BM501797
EST:     CTGCAAGGAAGATGATGGGTGGNTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGGGACAACGGCCTG
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTG
EST: gi|4966758|gb|AI691614.1|AI691614
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|109637708|gb|EC591253.1|EC591253
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|67018572|gb|CO447321.1|CO447321
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|71326724|gb|DR800024.1|DR800024
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|24766340|gb|CA401494.1|CA401494
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|60338284|gb|DN205257.1|DN205257
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTG
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTG
EST: gi|16917634|gb|BM073377.1|BM073377
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|9794594|gb|BE552902.1|BE552902
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|32862757|gb|CF002439.1|CF002439
EST:     TGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACCCTGCGTTCGAC
genomic: TGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|16379656|gb|BI993080.1|BI993080
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|32867249|gb|CF006931.1|CF006931
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|6526708|gb|AW215993.1|AW215993
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|60337898|gb|DN204871.1|DN204871
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|33098441|gb|CF058401.1|CF058401
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|31360342|gb|CD444699.1|CD444699
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|13382182|gb|BG458857.1|BG458857
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|32932008|gb|CF036820.1|CF036820
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|78124411|gb|DV542795.1|DV542795
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|33094693|gb|CF054687.1|CF054687
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|5819338|gb|AI987544.1|AI987544
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|14206794|gb|BG840472.1|BG840472
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|4967006|gb|AI692004.1|AI692004
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGCCAACGGCCTGATGGTGGGCACCCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
EST: gi|5468602|gb|AI834393.1|AI834393
EST:     CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAG                         TCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC
genomic: CTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 172

CATGATGAGTGTAGATGATACATTGATGTGCTCGTTCCAAATATTGAAGCCTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGACAGGGGGTACATCTTACAGCGGCTGCAACTAACAGGCATATGCATTTTCG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 228

CATGATGAGTGTAGATGATACATTGATGTGCTCGTTCCAAATATTGAAGCCTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGACAGGGGGTACATCTTACAGCGGCTGCAACTAACAGGCATATGCATTTTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 355

CATGATGAGTGTAGATGATACATTGATGTGCTCGTTCCAAATATTGAAGCCTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGACAGGGGGTACATCTTACAGCGGCTGCAACTAACAGGCATATGCATTTTCG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 131

CATGATGAGTGTAGATGATACATTGATGTGCTCGTTCCAAATATTGAAGCCTGCAAGGAAGATGATGGGTGGTTCAACTAATAACAAATCTGGCTTCAAGgtatgcatga ... tgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGACAGGGGGTACATCTTACAGCGGCTGCAACTAACAGGCATATGCATTTTCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttaaattgggaaattggaactcagtttcatttgttgactctttgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGACAGGGGGTACATCTTACAGCGGCTGCAACTAACAGGCATATGCATTTTCG
                                  tgttgac  putative branch site (score: 131)
                                        ctctttgtttt  CT-rich tract
                           tttcattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagcacttccaagttgatttgaattacagtttaacacagtatcatacttaaattgggaaattggaactcagtttcatttgttgactctttgttttgcagTCATTCAGGGGATGGTGACAACGGCCTGATGGTGGGCACGCTGCGTTCGACAGGGGGTACATCTTACAGCGGCTGCAACTAACAGGCATATGCATTTTCG

gtagcac
- - - - - - - -tgatttg
- - - - - - - - - - - - - - - - -aacacag