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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttctcgttcaacatttcatgatagcaatatgataggatcccctgcggtgctctttttcttatatgtgtgcaaacttatgtttttgccccacatgcagCTCGGCATTGATACAGTCCCAGTGCTTGTTGGACCAGTCTCATACTTGCTCCTCTCTAAGCCTGCCAAGGGTGTGGAGAAATCTTTCTCTCTTCTTTCAC

Basic information

species Zea mays
transcript GRMZM2G112149_T03
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211335859|gb|FL127562.1|FL127562
EST:     TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAGGCG                         CTCGGCATTGATACAGTCCCAGTGCTTGTTGGACCAGTCTCATACTTGCTC
genomic: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAGGCGgtatgttgct ... ccacatgcagCTCGGCATTGATACAGTCCCAGTGCTTGTTGGACCAGTCTCATACTTGCTC
EST: gi|14701267|gb|BI233685.1|BI233685
EST:     TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAGGCG                         CTCGGCATTGATACAGTCCCA
genomic: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAGGCGgtatgttgct ... ccacatgcagCTCGGCATTGATACAGTCCCA
EST: gi|211325027|gb|FL127486.1|FL127486
EST:     TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAGGCG                         CTCGGCATTGATACAGTCCCAGTGCTTGTTGGACCAGTCTCATACTTGCTC
genomic: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAGGCGgtatgttgct ... ccacatgcagCTCGGCATTGATACAGTCCCAGTGCTTGTTGGACCAGTCTCATACTTGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcggtgctctttttcttatatgtgtgcaaacttatgtttttgccccacatgcagCTCGGCATTGATACAGTCCCAGTGCTTGTTGGACCAGTCTCATACTTGCTCCTCTCTAAGCCTGCCAAGGGTGTGGAGAAATCTTTCTCTCTTCTTTCAC
                                     tttttgcccc  CT-rich tract
        tctttttcttatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attttctcgttcaacatttcatgatagcaatatgataggatcccctgcggtgctctttttcttatatgtgtgcaaacttatgtttttgccccacatgcagCTCGGCATTGATACAGTCCCAGTGCTTGTTGGACCAGTCTCATACTTGCTCCTCTCTAAGCCTGCCAAGGGTGTGGAGAAATCTTTCTCTCTTCTTTCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA