1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaggcttctaaattccagcttttggatcataatctaaagtcttcacaatgttaataacccttcattcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCTGGTGCGTTAGCTGAAGCATCCAAAGTATTACTGCTGGACGAACTGACCA
species | Zea mays |
transcript | GRMZM2G111511_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAG AGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCTEST: gi|211373270|gb|FL465535.1|FL465535
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: TAAGGGTATCAAAATCTTTGGATGCTGTTGGGATGTTGAGCTACTYTCAG AGGCCAATCCAAACTYTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCTEST: gi|211053231|gb|FL127757.1|FL127757
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: TAAGGGTATCAAAATCTTTGGATGCTGTTGGGATGTTGAGCTACTCTCAG AGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCTEST: gi|60394524|gb|DN227394.1|DN227394
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: TAAGGGTATCAAAATCTTTGGATGCTGTTGGGATGTTGAGCTACTCTCAG AGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCTEST: gi|17931952|gb|BM268912.1|BM268912
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAG AGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCTEST: gi|32866994|gb|CF006676.1|CF006676
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: TAAGGGTATCAAAATCTTTGGATGCTGTTGGGATGTTGAGCTACTCTCAG AGGCCGATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCTEST: gi|14242904|gb|BG840234.2|BG840234
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAG AGGCCAATCCAAACTCTGAGTGGTEST: gi|18165876|gb|BM335715.1|BM335715
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGT
EST: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAG AGGCCAATCCAAACTATGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCTEST: gi|17932020|gb|BM268980.1|BM268980
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAG AGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCTEST: gi|14243054|gb|BG840773.2|BG840773
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
EST: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAG AGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
genomic: TAAGGGTATCAAAATCTTTGGATGCCGTTGGGATGTTGAGCTACTCTCAGgtaggcttct ... attcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCT
cttttggatcataatctaaagtcttcacaatgttaataacccttcattcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCTGGTGCGTTAGCTGAAGCATCCAAAGTATTACTGCTGGACGAACTGACCA
taataac putative branch site (score: 24)
cccttcattc CT-rich tract
aatgttaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcttctaaattccagcttttggatcataatctaaagtcttcacaatgttaataacccttcattcaaacagAGGCCAATCCAAACTCTGAGTGGTGGGCAGAAACAGAGAGTTGCAATTGCTGGTGCGTTAGCTGAAGCATCCAAAGTATTACTGCTGGACGAACTGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA