1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gcatgcatcaatgttcctgaagattagttgtcttgttgttcatgtatttcacaatattattgatgtatgccttttcctgcgtatgatatgcagGACCGAGAAATTATAAGGGTCATTGTTGACTGTTGTCTGCATGAGAAGATGTTCAATAAGTATTACACAGTCCTTGCTTCCAAGCTATGCAACCATGAGA
species | Zea mays |
transcript | GRMZM2G111138_T07 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTAGATGCTTTTGAAAAGCTCTTGAGGCTGGGCCTTTCTGGGAAGCAG GACCGAGAAATTATAAGGGTCATTGTTGACTGTTGTCTGCATGAGAAGATGEST: gi|61118078|gb|DN559039.1|DN559039
genomic: ATGTAGATGCTTTTGAAAAGCTCTTGAGGCTGGGCCTTTCTGGGAAGCAGgcatgcatca ... tgatatgcagGACCGAGAAATTATAAGGGTCATTGTTGACTGTTGTCTGCATGAGAAGATG
EST: ATGTAGATGCTTTTGAAAAGCTCTTGAGGCTGGGCCTTTCTGGGAAGCAG GACCGAGAAATTATAAGGGTCATTGTTGACTGTTGTCTGCATGAGAAGATGEST: gi|61118076|gb|DN559037.1|DN559037
genomic: ATGTAGATGCTTTTGAAAAGCTCTTGAGGCTGGGCCTTTCTGGGAAGCAGgcatgcatca ... tgatatgcagGACCGAGAAATTATAAGGGTCATTGTTGACTGTTGTCTGCATGAGAAGATG
EST: ATGTAGATGCTTTTGAAAAGCTCTTGAGGCTGGGCCTTTCTGGGAAGCAG GACCGAGAAATTATAAGGGTCATTGTTGACTGTTGTCTGCATGAGAAGATGEST: gi|6564094|gb|AW231716.1|AW231716
genomic: ATGTAGATGCTTTTGAAAAGCTCTTGAGGCTGGGCCTTTCTGGGAAGCAGgcatgcatca ... tgatatgcagGACCGAGAAATTATAAGGGTCATTGTTGACTGTTGTCTGCATGAGAAGATG
EST: ATGTAGATGCTTTTGAAAAGCTCTTGAGGCTGGGCCTTTCTGGGAAGCAG GACCGAGAAATTATAAGGGTCATTGTTGACTGTTGTCTGCATGAGAAGATGEST: gi|60345567|gb|DN212540.1|DN212540
genomic: ATGTAGATGCTTTTGAAAAGCTCTTGAGGCTGGGCCTTTCTGGGAAGCAGgcatgcatca ... tgatatgcagGACCGAGAAATTATAAGGGTCATTGTTGACTGTTGTCTGCATGAGAAGATG
EST: ATGTAGATGCTTTTGAAAAGCTCTTGAGGCTGGGCCTTTCTGGGAAGCAG GACCGAGAAATTATAAGGGTCATTGTTGACTGTTGTCTGCATGAGAAGATG
genomic: ATGTAGATGCTTTTGAAAAGCTCTTGAGGCTGGGCCTTTCTGGGAAGCAGgcatgcatca ... tgatatgcagGACCGAGAAATTATAAGGGTCATTGTTGACTGTTGTCTGCATGAGAAGATG
ttcatgtatttcacaatattattgatgtatgccttttcctgcgtatgatatgcagGACCGAGAAATTATAAGGGTCATTGTTGACTGTTGTCTGCATGAGAAGATGTTCAATAAGTATTACACAGTCCTTGCTTCCAAGCTATGCAACCATGAGA
tattgat putative branch site (score: 3)
tatttcacaatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgcatcaatgttcctgaagattagttgtcttgttgttcatgtatttcacaatattattgatgtatgccttttcctgcgtatgatatgcagGACCGAGAAATTATAAGGGTCATTGTTGACTGTTGTCTGCATGAGAAGATGTTCAATAAGTATTACACAGTCCTTGCTTCCAAGCTATGCAACCATGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT