Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaatataattcatactgtcttgatgctgcttatatcaaaatgtccttttgttccttcttttttctaacatgcttctctcacagTGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTATACTTGGGTGTGTTCTTTGTGTTGTGGGTTCAACAACTATTGTACTTCAT

Basic information

species Zea mays
transcript GRMZM2G110398_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110398_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g65986.1 (Oryza sativa), 3'ss of exon 3
gtaagaaatataattcatact------gtcttga-------tgctgcttatatcaaaatgtccttttgttccttcttttttctaacatgcttctctcacagTGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTATACTTGGGTGTGTTCTTTGTGTTGTGGGTTCAACAACTATTGTACTTCAT
|||| |  ||  |   | |||       ||||||       ||||| ||||||    ||  |  | ||||| |||||  |  || |||  ||||   ||||||||| ||||||||| |||||||||||||| ||||| || ||||||||||||||||| ||||| || |||||||||||||||||||| ||||| ||||||
gtaacagctagcacctacacttccctaatcttgagatctcctgctgtttatattttcat--cagtctgttcattcttcatcttagcatatttcttctacagTGCTGTTCTTGCAGATATTATGTTGAAGGAGAAGCTTCACATATTTGGTATACTTGGTTGTGTCCTCTGTGTTGTGGGTTCAACAACCATTGTGCTTCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22489649|gb|BU049585.1|BU049585
EST:     GCTCCTGCTATCTTGGTCACACCACTTGGTGCCCTTAGCATCATAATTAG                         TGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTAT
genomic: GCTCCTGCTATCTTGGTCACACCACTTGGTGCACTTAGCATCATAATTAGgtaagaaata ... tctctcacagTGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTAT
EST: gi|87152947|gb|DY397736.1|DY397736
EST:     GCTCCTGCTATCTTGGTCACACCACTTGGTGCCCTTAGCATCATAATTAG                         TGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTAT
genomic: GCTCCTGCTATCTTGGTCACACCACTTGGTGCACTTAGCATCATAATTAGgtaagaaata ... tctctcacagTGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTAT
EST: gi|60340735|gb|DN207708.1|DN207708
EST:     GCTCCTGCTATCTTGGTCACACCACTTGGTGCACTTAGCATCATAATTAG                         TGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTAT
genomic: GCTCCTGCTATCTTGGTCACACCACTTGGTGCACTTAGCATCATAATTAGgtaagaaata ... tctctcacagTGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatatcaaaatgtccttttgttccttcttttttctaacatgcttctctcacagTGCTGCTCTTGCAGACATTATGTTGAAGGAAAAGCTGCATATATTTGGTATACTTGGGTGTGTTCTTTGTGTTGTGGGTTCAACAACTATTGTACTTCAT
                                 ttctaac  putative branch site (score: 1)
              tccttttgttccttct  CT-rich tract
                             ttttttctaa  TA-rich tract