1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatattaactgaacctgatattgtgtcacttagttgtttttacagctttgagcatgatagttaggcacaaaatctttttggtttcagttttacatgtgccagcgcactataacttctctctctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG
species | Zea mays |
transcript | GRMZM2G110185_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|5846988|gb|AW000067.1|AW000067
genomic: GGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGATTTGGTTTCAGNATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|211035074|gb|FL073374.1|FL073374
genomic: GGATTTGGTTTCAG-ATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGGATGTACAAAEST: gi|5296364|gb|AI783134.1|AI783134
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAG-ATGTACAAA
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|211010592|gb|FL355819.1|FL355819
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTMGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|211283518|gb|FL004413.1|FL004413
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
tttggtttcagttttacatgtgccagcgcactataacttctctctctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG
ctataac putative branch site (score: 3)
ctataacttctctctc CT-rich tract
ttttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattaactgaacctgatattgtgtcacttagttgtttttacagctttgagcatgatagttaggcacaaaatctttttggtttcagttttacatgtgccagcgcactataacttctctctctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG