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gtatattaactgaacctgatattgtgtcacttagttgtttttacagctttgagcatgatagttaggcacaaaatctttttggtttcagttttacatgtgccagcgcactataacttctctctctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG
species | Zea mays |
transcript | GRMZM2G110185_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|211399668|gb|FL004442.1|FL004442
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|149015481|gb|EE045355.2|EE045355
genomic: GGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|18964384|gb|BM660974.1|BM660974
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|101395193|gb|EB819526.1|EB819526
genomic: GGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|149087114|gb|EE176653.2|EE176653
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|211399660|gb|FL004434.1|FL004434
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|30087195|gb|CB885403.1|CB885403
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|19437016|gb|BM953426.1|BM953426
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|211283515|gb|FL004410.1|FL004410
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|211035074|gb|FL073374.1|FL073374
genomic: GGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGGATGTACAAAEST: gi|67028224|gb|CO456973.1|CO456973
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAG-ATGTACAAA
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|78085799|gb|DV514192.1|DV514192
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|211010592|gb|FL355819.1|FL355819
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTMGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|28930845|gb|CB334206.1|CB334206
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATEST: gi|211283518|gb|FL004413.1|FL004413
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
EST: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAA GTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
genomic: GGGATTTGGTTTCAGATAAGCAGATGATGCAAGAAGAACAACCGTTACAAgtatattaac ... ctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATAT
tttggtttcagttttacatgtgccagcgcactataacttctctctctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG
ctataac putative branch site (score: 3)
ctataacttctctctc CT-rich tract
ttttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattaactgaacctgatattgtgtcacttagttgtttttacagctttgagcatgatagttaggcacaaaatctttttggtttcagttttacatgtgccagcgcactataacttctctctctttctgcagGTAGCAAGATGTACAAAGATTATAAGCCCTAATACGGATGATGCCAAATATGTTATAAATGTAAAACAAATTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG