Sequence
atgc intronic sequence ATGC exonic sequencegtttgtaggcattctttcatgtatactactcaaatggtacattggaaacacctttaagaagcgtgcaatattttctgtttgttcagATGGATTACATAAGAAAACAGAGTGTACCAAAGGATGGGAAATTGCTTGCTATTGGTCATTCCATGGGAGGAATCTTATTGTATGCAATGGTTTCAAAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G109976_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g49760.1 (Oryza sativa), 3'ss of exon 3
gtttgtaggcat--tctttcatgtat----actactcaaatggtacattggaaacacctttaagaagcgtgcaatattttctgttt-----gttcagATGGATTACATAAGAAAACAGAGTGTACCAAAGGATGGGAAATTGCTTGCTATTGGTCATTCCATGGGAGGAATCTTATTGTATGCAATGGTTTCAAAGT
|||||| | | ||| ||| ||| | |||| | || ||| ||| ||| | ||| ||| || ||| |||||| ||| | |||||| |||| || | | | || || | |||||||||| ||| ||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||||||||
gtttgttaacttagccttccatctataaagatcactcgattgatac-ctgggaaccctggtaaaaagtgt-taatcttttctctttttatcatgcagATGAATTATATTAAACAGCAAAGCCCAACAAAGGATGGCAAACTGCTTGCCATTGGTCATTCAATGGGGGGAATATTATTATATGCAATGGTTTCAAAGT
upper sequence: GRMZM2G109976_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA09G31160.1 (Glycine max), 3'ss of exon 3
-----------------------------------------------------------------------------------------------gtttgta--ggcattctttcatgtatactactcaaatggta-cattggaaacacctttaagaagcgtgcaatattttctgtttgttcagATGGATTACATAAGAAAACAGAGTGTACCAAAGGATGGGAAATTGCTTGCTATTGGTCATTCCATGGGAGGAATCTTATTGTATGCAATGGTTTCAAAGT
|||||| || || || | | | ||| | |||| | ||| | | | || | || || ||||||| |||||||| || | ||||| ||||| |||||||| || |||||||| || ||||| || ||||| |||||||||||| |||||| |
gtgagatgactttcctttgggatacattacttttaatttagcaagatctgtacttttaactattttgttacttcttttgtgtaattttaatatttgtttgttccactatatattggcctaaaatttttggatgttctcattaaatttgtttttcaattgttggtttgataattcgtacatt-agATGGAGTACATAAGGGCTCAATGCCAACCAAGAGATGGAAAATTGCTGGCAATTGGTCACTCAATGGGGGGTATCTTGTTGTATGCAATGCTTTCAAGTT
upper sequence: GRMZM2G109976_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv17s0000g03200.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------------------------------------------------gtttgtaggcattctttcatgtatactactcaaatggtacattggaaacacctttaagaagcgt-gcaatattt---tctgtttgttcagATGGATTACATAAGAAAACAGAGTGTACCAAAGGATGGGAAATTGCTTGCTATTGGTCATTCCATGGGAGGAATCTTATTGTATGCAATGGTTTCAAAGT
| || | | ||| | || | || || || || | | |||| || | |||||| | ||||| || ||||||| || ||||| | | | |||||||||||| || |||||||| |||||||| |||||||| || || || ||||||||||| ||||| | |
gtgaggtgacattttttcatgatactgactttggttgatgacattctgttttgttttgtgctctccatatttgatatatgtgattggaatctctttctagaaccaatcctata-taaatct-attctccttgaatgtttattacaatatgtagttctgtcagtgtagATGGAGTATATAAGGACTCTATGCAAACCAAAGGATGGCAAGTTGCTTGCAATTGGTCACTCCATGGGGGGTATATTGCTGTATGCAATGCTTTCACAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatggtacattggaaacacctttaagaagcgtgcaatattttctgtttgttcagATGGATTACATAAGAAAACAGAGTGTACCAAAGGATGGGAAATTGCTTGCTATTGGTCATTCCATGGGAGGAATCTTATTGTATGCAATGGTTTCAAAGT
ttttctgtttgttc CT-rich tract
aatattttctgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtaggcattctttcatgtatactactcaaatggtacattggaaacacctttaagaagcgtgcaatattttctgtttgttcagATGGATTACATAAGAAAACAGAGTGTACCAAAGGATGGGAAATTGCTTGCTATTGGTCATTCCATGGGAGGAATCTTATTGTATGCAATGGTTTCAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA