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gttggttttatttacatgctttgtaatccttggatttatccttttcttttaccaatttctgagatttggtataatttggggctacacagAGTCGCTTAGCTGGAAGTATTCTTGCAAGCATTGAGTCTGGATATTCGATTTCTCATCAAAGAACCTTAGACAAAG
species | Zea mays |
transcript | GRMZM2G109651_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGAGGTATACACTGATGAGCCTACTTTTGTTAAGGATAACACAGGACAG AGTCGCTTAGCTGGAAGTATTCTTGCAAGCATTGAGTCTGGATATTCGATTEST: gi|93017293|gb|EB642813.1|EB642813
genomic: AGGAGGTATACACTGATGAGCCTACTTTTGTTAAGGATAACACAGGACAGgttggtttta ... ggctacacagAGTCGCTTAGCTGGAAGTATTCTTGCAAGCATTGAGTCTGGATATTCGATT
EST: AGGAGGTATACACTGATGAGCCTACTTTTGTTAAGGATAACACAGGACAG AGTCGCTTAGCTGGAAGTATTCTTGCAAGCATTGAGTCTGGATATTCEST: gi|4804552|gb|AI665574.2|AI665574
genomic: AGGAGGTATACACTGATGAGCCTACTTTTGTTAAGGATAACACAGGACAGgttggtttta ... ggctacacagAGTCGCTTAGCTGGAAGTATTCTTGCAAGCATTGAGTCTGGATATTC
EST: AGGAGGTATACACTGATGAGCCTACTTTTGTTAAGGATAACACAGGACAG AGTCGCTTAGCTGGAAGTATTCTTGCAAGCATTGAGTCTGGATATTCGATTEST: gi|78027070|gb|DV495457.1|DV495457
genomic: AGGAGGTATACACTGATGAGCCTACTTTTGTTAAGGATAACACAGGACAGgttggtttta ... ggctacacagAGTCGCTTAGCTGGAAGTATTCTTGCAAGCATTGAGTCTGGATATTCGATT
EST: AGGAGGTATACACTGATGAGCCTACTTTTGTTAAGGATAACACAGGACAG AGTCGCTTAGCTGGAAGTATTCTTGCAAGCATTGAGTCTGGATATTCGATT
genomic: AGGAGGTATACACTGATGAGCCTACTTTTGTTAAGGATAACACAGGACAGgttggtttta ... ggctacacagAGTCGCTTAGCTGGAAGTATTCTTGCAAGCATTGAGTCTGGATATTCGATT
tttatccttttcttttaccaatttctgagatttggtataatttggggctacacagAGTCGCTTAGCTGGAAGTATTCTTGCAAGCATTGAGTCTGGATATTCGATTTCTCATCAAAGAACCTTAGACAAAG
atttggtataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttttatttacatgctttgtaatccttggatttatccttttcttttaccaatttctgagatttggtataatttggggctacacagAGTCGCTTAGCTGGAAGTATTCTTGCAAGCATTGAGTCTGGATATTCGATTTCTCATCAAAGAACCTTAGACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC